Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0275 ATGTTTGATTGTGGATACAAATCACAGTATATAGGTGGCCAGAGGGAGAAATTTGTAAGGTTGGATTCTAATATGTCAATGTCTTCCGGTACTGCTGGGATGAAGAAAACCCGATTTAATCTCGAGAGGTTTTCCTTTTCCGGCCGTTCAAAGAAAAACCCATCAAAATCCTTCAGAAAAGGGGTACAAATTGGATCAGATGGAATAAGAACATTCGGTCGGTCATTAAGGTCAGGCGTTACCCGTGCTGTTTTTCCAGAAGATCTTAAGGTTGCAGATAAAAGGATATTTGACCCTCAAGACAAATCACTCCTTACCTGGACTAGACTATTTGTCCTATGTTGTATTTTCGCAGTCTCTATAGATCCTTTGTTTTTCTACCTTCCCGTCATAGATGGAGGGTCCAACTGTCTTGGAATTGATACAAGACTAGCCATCATAACTACTACTTTGAGGACTACAATTGATACTTCCTACCTTTTCAGAATGGCCCTTCAATTCCGCACTGCTTATATTGCTCCATCATCTCGAGTTTTTGGACGAGGTGAACTTGTGATAGATCCTGCTCAGATAGCGCGTCGATATTTAACGCGTTATTTCATAGTTGACCTTTTGTCTGTGCTACCTTTTCCACAGATTGTGGTGTGGAGATTCCTTAAAAGATCAAAAGGTTCAGAGGTGTTTGCTACAAAGCAGGCATTACTAAGGATTGTCCTCATCCAATATATTCCCAGATTCATCCGCTTTATACCTTTAAACACCGAGCTGAAAAAAACAGCCGGTGTTTTTGCTGAAAGTGCTTTTGCCGGAGCTGCTTACTATTTGCTTCTATATATGCTTGCTAGTCATATAACTGGGTCTTTCTGGTACTTGCTAGCCGTAGAACGAAACGGTACATGTTGGAGAAAAGCTTGCTATAATAATGATCAATGTAAGATTAATTTTCTCTACTGTAATGATTGGCATCCGGGCGGTTATGATGAATGGAAAGGTATGAGCGAACGAGTTTTTAGAGAAGAGTGCGCTCCCAACGGCAATGACGCCAGATTTAACTTTGGGATTTACACTCAGGCTATTGAATCTGGTGTTGTCCAATCCTCTATATTTTTCTCTAAATTCTGCTACTGCTTCTGGTGGGGTCTCCAAAATTTGAGTACACTTGGTCAGGGGCTTCAAACCAGTCTGTATCCTGGAGAAGTTGTATTTTCTATATGTATCGGAATTTTTGGGCTCATCCTCTTTGCCCTTCTTATAGGAAACATGCAAACCTATCTTCAATCTCTTACCGTCCGTCTCGAGGAGATGAGGATCAAAAGACGCGATTCTGAGCAGTGGATGCATCACCGTTTACTCCCACAAGATCTTAGAGAGAGAGTAAGGCGATACGACCAATACAAATGGTTAGAAACCAGAGGAGTAGACGAAGAGAGTCTAGTCCAAAACCTTCCTAAAGATTTAAGGAGGGATATCAAACGACACCTCTGTCTCAATTTGGTCAGAAGGGTGCCTTTGTTTGCCAACATGGACGAGCGTTTACTGGACGCTATTTGTGAACGCTTGAAGCCAACTTTATATACAGAAAGTACTTATATAGTAAGGGAAGGGGACCCAGTAAACGAAATGCTCTTCATCATACGTGGCAGGTTAGAGAGTGTAACTACAGATGGAGGAAGAAGCGGTTTCTTCAACCGCGGTGTGCTCAAAGAAGGAGATTTCTGCGGAGAAGAGTTGTTAACATGGGCTTTAGATCCCAAAGCGGGGTCAAACTTACCGTCTTCAACTAGAACCGTAAACGCTATAACGGAAGTGGAAGCGTTTGCGTTAGAAGCAGAAGAGCTTAAGTTTGTGGCTGGTCAGTTCAGGCGGCTGCATAGTAGAGCGGTTCAGCATACGTTCCGGTTTTATTCACAGCAGTGGAGGACATGGGCTGCTTGCTTTATTCAGGCGACGTGGAGGAGATATTTGAGGAGGAAGGTGGCGGAGCAGATTAGGAGAGAGGAGGAAGAGGCGGAGAGAGAAGCCGGCGATAGCGGCCGCAGCGGATCTGGTGGTGGTTGTGATGGAGAGGGCGAGGTTTATAGTGATGAGAGTGCATTGATTGTAAGTAAGTCAAAGTCAACGAGACTGGGTGCGACTATTCTGGCGTCGAGATTTGCGGCTAGTGCTCTTCGTGGGATGAAGAGGCGTAGTTCCAGTTCGGTATCGTTAGTTAAACCGCCTAAGCCTACCGAGCCGGATTTCTCCATCTATGAGGCAGAGGAGTAA 2265 44.11 MFDCGYKSQYIGGQREKFVRLDSNMSMSSGTAGMKKTRFNLERFSFSGRSKKNPSKSFRKGVQIGSDGIRTFGRSLRSGVTRAVFPEDLKVADKRIFDPQDKSLLTWTRLFVLCCIFAVSIDPLFFYLPVIDGGSNCLGIDTRLAIITTTLRTTIDTSYLFRMALQFRTAYIAPSSRVFGRGELVIDPAQIARRYLTRYFIVDLLSVLPFPQIVVWRFLKRSKGSEVFATKQALLRIVLIQYIPRFIRFIPLNTELKKTAGVFAESAFAGAAYYLLLYMLASHITGSFWYLLAVERNGTCWRKACYNNDQCKINFLYCNDWHPGGYDEWKGMSERVFREECAPNGNDARFNFGIYTQAIESGVVQSSIFFSKFCYCFWWGLQNLSTLGQGLQTSLYPGEVVFSICIGIFGLILFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEESLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKAGSNLPSSTRTVNAITEVEAFALEAEELKFVAGQFRRLHSRAVQHTFRFYSQQWRTWAACFIQATWRRYLRRKVAEQIRREEEEAEREAGDSGRSGSGGGCDGEGEVYSDESALIVSKSKSTRLGATILASRFAASALRGMKRRSSSSVSLVKPPKPTEPDFSIYEAEE 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1299404 1302385 - Conep17aG0027800.1 Cone17ag0275 455752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0275 754 Gene3D Jelly Rolls 502 622 IPR014710 -
Cone17ag0275 754 MobiDBLite consensus disorder prediction 726 754 - -
Cone17ag0275 754 FunFam Cyclic nucleotide-gated ion channel 1 431 495 - -
Cone17ag0275 754 Gene3D - 105 429 - -
Cone17ag0275 754 SMART cnmp_10 504 635 IPR000595 -
Cone17ag0275 754 SUPERFAMILY Voltage-gated potassium channels 99 426 - -
Cone17ag0275 754 PRINTS EAG/ELK/ERG potassium channel family signature 280 290 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone17ag0275 754 PRINTS EAG/ELK/ERG potassium channel family signature 399 410 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone17ag0275 754 PRINTS EAG/ELK/ERG potassium channel family signature 417 426 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone17ag0275 754 PRINTS EAG/ELK/ERG potassium channel family signature 467 474 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone17ag0275 754 PRINTS EAG/ELK/ERG potassium channel family signature 163 172 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone17ag0275 754 Coils Coil 656 676 - -
Cone17ag0275 754 Gene3D Helix hairpin bin 431 495 - -
Cone17ag0275 754 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Cone17ag0275 754 CDD CAP_ED 504 635 IPR000595 -
Cone17ag0275 754 ProSiteProfiles cAMP/cGMP binding motif profile. 504 634 IPR000595 -
Cone17ag0275 754 MobiDBLite consensus disorder prediction 666 688 - -
Cone17ag0275 754 FunFam Cyclic nucleotide-gated ion channel 1 502 620 - -
Cone17ag0275 754 Pfam Cyclic nucleotide-binding domain 525 614 IPR000595 -
Cone17ag0275 754 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 77 730 - -
Cone17ag0275 754 Pfam Ion transport protein 107 431 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag0275 754 ProSiteProfiles IQ motif profile. 640 669 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0023 Cone-Chr14:193491 Cone17ag0275 Cone-Chr17:1299404 4.49E-17 dispersed
Cone16ag0413 Cone-Chr16:6539623 Cone17ag0275 Cone-Chr17:1299404 0 dispersed
Cone17ag0275 Cone-Chr17:1299404 Cone2ag0580 Cone-Chr2:3369644 0 dispersed
Cone17ag0275 Cone-Chr17:1299404 Cone20ag1136 Cone-Chr20:7746875 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0275 K05391 - csv:101221166 1082.78