Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0276 ATGGCGGACCTCAAAGAGCGCTTGCTCCCTCCAAGACCCATTTCTGCTATAAATCTAAGGGATGCATCTCACAGACCATCAACCTCAGGAAGGCAACCTTTTCAAGGCATAGATTTTGTAGGGCTAAAGAAGAGGGGCCAAGGCCTTCGTTCTTGGATCCGGGTTGATTCATCTGGGAACTCTCAGATCATTGAGGTCGATAAGTTTACTATGATGCGTAGGTGTGACCTACCAGCTCGTGATTTACGCCTTCTTGATCCTTTATTTGTTTACCCCTCTACAATCCTTGGTAGAGAGAAGGCTATTGTTGTTAATTTGGAGCAGATTCGTTGTATTATTACAGCAGATGAGGTCTTTCTCTTGAATTCTCGTGATAATTATGTATTGCAATATGTGGTGGAGCTACAGCGACGATTAACTACTGCTGGAGTTGGTGAGGATTGGAAATCTGAAAATACTGATTTAAACTGGAGGAGGGAAGGTATAAATTTTGAGGATGTATTTGGTACCACTTCTCCTGATTATTTGCCCTTTGAATTTAGGGCTTTAGAAGTTGCATTGGAGGCTGCTTGTACATTTCTCGATTCCCAGGCAGCAGAATTAGAAATCGAAGCATACCCATTGCTGGATGAATTGACATCAAAGATCAGTACATTAAACTTGGAACGTGTCCGTCGTTTGAAAAGTAGACTTGTTGCATTGACTCGAAGAGTTCAGAAGGTTAGGGATGAAATAGAACAGCTTATGGATGATGATGGAGATATGGCAGAGATGTATCTCACTGAGAAGAAAAATGGGGCCGAGTCTCCATTTCATGGTGATCAGTCTGTATTTGGATACAGATCAACTGAAGGGGCATCAATTTCAGCACCTGTTTCTCCTGTCTCATCACCACCACTTGATGGCAGAAGGCTCGAGAAAACCCAAAGTATTGCAAGGAGTCGACATGAAAGTATGAGAAGTACAGAAAGTACTTCAGAAAGTATAGAAGAGCTTGAGATGTTATTGGAAGCATACTTTGTTGTGATTGATAGCACCCTAAACAAATTGACATCCTTGAAGGAATATATTGACGACACAGAAGATTTCATCAACATTCAGTTGGATAATGTACGAAATCAGCTGATTCAATTTGAGTTGCTACTCACGACTGGAACTTTCGTTGTTGCCATCTTCGGAGTGGTGGCAGGAGTATTTGGCATGAATTTTTCGATTCCACTGTTTGATGATCCAGACGCATTTAAGTGGGTCCTTTTAATTACAGGATTATGTGGGATTATCATCTTTTGTGCATTTGTTTGGTTCTTCAGATACAGAAGACTAATGCCACTGTAG 1335 41.35 MADLKERLLPPRPISAINLRDASHRPSTSGRQPFQGIDFVGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVFLLNSRDNYVLQYVVELQRRLTTAGVGEDWKSENTDLNWRREGINFEDVFGTTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKNGAESPFHGDQSVFGYRSTEGASISAPVSPVSSPPLDGRRLEKTQSIARSRHESMRSTESTSESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTGTFVVAIFGVVAGVFGMNFSIPLFDDPDAFKWVLLITGLCGIIIFCAFVWFFRYRRLMPL 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1309074 1312163 - Conep17aG0027900.1 Cone17ag0276 455753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0276 444 CDD Mrs2_Mfm1p-like 52 441 IPR039204 -
Cone17ag0276 444 Gene3D Magnesium transport protein CorA, transmembrane region 382 442 - -
Cone17ag0276 444 Pfam Magnesium transporter MRS2-like 56 267 - -
Cone17ag0276 444 Gene3D - 40 123 - -
Cone17ag0276 444 Coils Coil 224 251 - -
Cone17ag0276 444 FunFam Magnesium transporter MRS2-1 382 442 - -
Cone17ag0276 444 Pfam CorA-like Mg2+ transporter protein 335 430 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Cone17ag0276 444 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 381 434 IPR045863 -
Cone17ag0276 444 FunFam Magnesium transporter MRS2-1 40 123 - -
Cone17ag0276 444 Gene3D Magnesium transport protein CorA, transmembrane region 127 375 - -
Cone17ag0276 444 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 39 441 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0946 Cone-Chr11:7720456 Cone17ag0276 Cone-Chr17:1309074 3.23E-242 dispersed
Cone17ag0276 Cone-Chr17:1309074 Cone9ag0537 Cone-Chr9:2568874 2.02E-129 dispersed
Cone17ag0276 Cone-Chr17:1309074 Cone20ag1134 Cone-Chr20:7734583 6.38E-232 wgd
Cone17ag0276 Cone-Chr17:1309074 Cone4ag1110 Cone-Chr4:9607687 1.23E-50 wgd
Cone17ag0276 Cone-Chr17:1309074 Cone7ag1020 Cone-Chr7:7874808 2.93E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0276 K16075 - cit:102622939 691.034