Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0276 ATGGCGGACCTCAAAGAGCGCTTGCTCCCTCCAAGACCCATTTCTGCTATAAATCTAAGGGATGCATCTCACAGACCATCAACCTCAGGAAGGCAACCTTTTCAAGGCATAGATTTTGTAGGGCTAAAGAAGAGGGGCCAAGGCCTTCGTTCTTGGATCCGGGTTGATTCATCTGGGAACTCTCAGATCATTGAGGTCGATAAGTTTACTATGATGCGTAGGTGTGACCTACCAGCTCGTGATTTACGCCTTCTTGATCCTTTATTTGTTTACCCCTCTACAATCCTTGGTAGAGAGAAGGCTATTGTTGTTAATTTGGAGCAGATTCGTTGTATTATTACAGCAGATGAGGTCTTTCTCTTGAATTCTCGTGATAATTATGTATTGCAATATGTGGTGGAGCTACAGCGACGATTAACTACTGCTGGAGTTGGTGAGGATTGGAAATCTGAAAATACTGATTTAAACTGGAGGAGGGAAGGTATAAATTTTGAGGATGTATTTGGTACCACTTCTCCTGATTATTTGCCCTTTGAATTTAGGGCTTTAGAAGTTGCATTGGAGGCTGCTTGTACATTTCTCGATTCCCAGGCAGCAGAATTAGAAATCGAAGCATACCCATTGCTGGATGAATTGACATCAAAGATCAGTACATTAAACTTGGAACGTGTCCGTCGTTTGAAAAGTAGACTTGTTGCATTGACTCGAAGAGTTCAGAAGGTTAGGGATGAAATAGAACAGCTTATGGATGATGATGGAGATATGGCAGAGATGTATCTCACTGAGAAGAAAAATGGGGCCGAGTCTCCATTTCATGGTGATCAGTCTGTATTTGGATACAGATCAACTGAAGGGGCATCAATTTCAGCACCTGTTTCTCCTGTCTCATCACCACCACTTGATGGCAGAAGGCTCGAGAAAACCCAAAGTATTGCAAGGAGTCGACATGAAAGTATGAGAAGTACAGAAAGTACTTCAGAAAGTATAGAAGAGCTTGAGATGTTATTGGAAGCATACTTTGTTGTGATTGATAGCACCCTAAACAAATTGACATCCTTGAAGGAATATATTGACGACACAGAAGATTTCATCAACATTCAGTTGGATAATGTACGAAATCAGCTGATTCAATTTGAGTTGCTACTCACGACTGGAACTTTCGTTGTTGCCATCTTCGGAGTGGTGGCAGGAGTATTTGGCATGAATTTTTCGATTCCACTGTTTGATGATCCAGACGCATTTAAGTGGGTCCTTTTAATTACAGGATTATGTGGGATTATCATCTTTTGTGCATTTGTTTGGTTCTTCAGATACAGAAGACTAATGCCACTGTAG 1335 41.35 MADLKERLLPPRPISAINLRDASHRPSTSGRQPFQGIDFVGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVFLLNSRDNYVLQYVVELQRRLTTAGVGEDWKSENTDLNWRREGINFEDVFGTTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKNGAESPFHGDQSVFGYRSTEGASISAPVSPVSSPPLDGRRLEKTQSIARSRHESMRSTESTSESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTGTFVVAIFGVVAGVFGMNFSIPLFDDPDAFKWVLLITGLCGIIIFCAFVWFFRYRRLMPL 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1309074 1312163 - Conep17aG0027900.1 Cone17ag0276 455753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0276 444 CDD Mrs2_Mfm1p-like 52 441 IPR039204 -
Cone17ag0276 444 Gene3D Magnesium transport protein CorA, transmembrane region 382 442 - -
Cone17ag0276 444 Pfam Magnesium transporter MRS2-like 56 267 - -
Cone17ag0276 444 Gene3D - 40 123 - -
Cone17ag0276 444 Coils Coil 224 251 - -
Cone17ag0276 444 FunFam Magnesium transporter MRS2-1 382 442 - -
Cone17ag0276 444 Pfam CorA-like Mg2+ transporter protein 335 430 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Cone17ag0276 444 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 381 434 IPR045863 -
Cone17ag0276 444 FunFam Magnesium transporter MRS2-1 40 123 - -
Cone17ag0276 444 Gene3D Magnesium transport protein CorA, transmembrane region 127 375 - -
Cone17ag0276 444 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 39 441 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0276 K16075 - - cit:102622939 691.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0946 Cone-Chr11:7720456 Cone17ag0276 Cone-Chr17:1309074 3.23E-242 dispersed
Cone17ag0276 Cone-Chr17:1309074 Cone9ag0537 Cone-Chr9:2568874 2.02E-129 dispersed
Cone17ag0276 Cone-Chr17:1309074 Cone20ag1134 Cone-Chr20:7734583 6.38E-232 wgd
Cone17ag0276 Cone-Chr17:1309074 Cone4ag1110 Cone-Chr4:9607687 1.23E-50 wgd
Cone17ag0276 Cone-Chr17:1309074 Cone7ag1020 Cone-Chr7:7874808 2.93E-101 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag0276 . 1 444 MRS2 Gene Family AT1G16010 81.3 1.8e-197 686.0
Cone11ag0946 . 1 441 MRS2 Gene Family AT1G16010 80.5 1.6e-193 672.9
Cone20ag1134 . 1 353 MRS2 Gene Family AT1G16010 81.9 4.4e-156 548.5
Cone9ag0537 . 14 423 MRS2 Gene Family AT1G16010 52.1 4.3e-111 399.1
Cone7ag1020 . 16 376 MRS2 Gene Family AT1G16010 50.3 6.1e-89 325.5
Cone15ag0138 . 1 369 MRS2 Gene Family AT5G64560 79.9 3.1e-158 555.4
Cone7ag1020 . 10 362 MRS2 Gene Family AT5G64560 69.3 5.7e-128 454.9
Cone14ag0131 . 32 307 MRS2 Gene Family AT5G64560 82.6 9.7e-120 427.6
Cone17ag0276 . 51 402 MRS2 Gene Family AT5G64560 50.9 2.5e-83 306.6
Cone7ag0295 . 3 169 MRS2 Gene Family AT5G64560 60.1 2.1e-37 154.1
Cone4ag0291 . 2 157 MRS2 Gene Family AT5G64560 57.9 6.0e-37 152.5
Cone3ag1040 . 40 472 MRS2 Gene Family AT3G19640 62.4 2.7e-138 489.6
Cone10ag0893 . 1 414 MRS2 Gene Family AT3G58970 66.8 3.6e-142 502.3
Cone3ag0920 . 1 414 MRS2 Gene Family AT3G58970 66.4 1.0e-141 500.7
Cone9ag0537 . 11 423 MRS2 Gene Family AT2G03620 66.0 2.3e-138 489.6
Cone17ag0276 . 13 444 MRS2 Gene Family AT2G03620 54.2 4.4e-113 405.6
Cone11ag0946 . 13 441 MRS2 Gene Family AT2G03620 54.0 2.2e-112 403.3
Cone20ag1134 . 13 353 MRS2 Gene Family AT2G03620 52.9 3.1e-82 303.1
Cone10ag0893 . 42 413 MRS2 Gene Family AT4G28580 51.7 1.2e-91 334.3
Cone3ag0920 . 42 413 MRS2 Gene Family AT4G28580 51.2 6.0e-91 332.0
Cone15ag0138 . 1 331 MRS2 Gene Family AT5G09690 72.1 1.0e-122 437.2
Cone7ag1020 . 5 324 MRS2 Gene Family AT5G09690 62.8 6.6e-101 364.8
Cone14ag0131 . 32 269 MRS2 Gene Family AT5G09690 72.0 7.3e-84 308.1
Cone17ag0276 . 43 380 MRS2 Gene Family AT5G09690 51.0 3.9e-77 285.8
Cone10ag0893 . 39 350 MRS2 Gene Family AT5G09690 50.2 6.8e-74 275.0
Cone3ag0920 . 39 350 MRS2 Gene Family AT5G09690 50.2 1.3e-72 270.8
Cone4ag1110 . 5 217 MRS2 Gene Family AT5G09690 58.1 9.0e-58 221.5
Cone15ag0138 . 23 291 MRS2 Gene Family AT5G09720 65.4 3.4e-88 322.4
Cone7ag1020 . 13 295 MRS2 Gene Family AT5G09720 54.7 4.5e-72 268.9
Cone14ag0131 . 32 229 MRS2 Gene Family AT5G09720 60.7 7.7e-56 214.9
Cone4ag1110 . 1 223 MRS2 Gene Family AT5G09720 52.6 2.6e-51 199.9
Cone17ag0276 . 1 444 MRS2 Gene Family AT1G80900 78.7 1.8e-189 659.4
Cone11ag0946 . 1 441 MRS2 Gene Family AT1G80900 79.5 4.0e-189 658.3
Cone20ag1134 . 1 353 MRS2 Gene Family AT1G80900 79.4 3.6e-150 528.9
Cone9ag0537 . 35 423 MRS2 Gene Family AT1G80900 52.0 1.8e-104 377.1
Cone11ag1343 . 10 454 MRS2 Gene Family AT5G22830 67.3 1.0e-155 547.4
Cone18ag0237 . 33 445 MRS2 Gene Family AT5G22830 68.8 1.7e-150 530.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42