Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0279 ATGGAGAGGAAGAAGTATCCGATCGGAGCTGAACATTATACTCTGTATGAGGAGGTTGGGCAGGGTGTCAGTGCTTCGGTTCACCGTGCTCTTTGTAAGCCTCTCAATGAGATAGTCGCCATCAAGATCCTCGACTTTGAACGCAGCAATTCTGATTTGAATAACATCTCCCGGGAAGCGCAAATCATGAACTTGGTCGACCACCCCAATATCCTTAAATCCAACTGCTCCTTTGTCAGTGATCATAGTCTGTGGGTTGTCATGCCGTACATGGCTGGGGGATCATGTCTCCACATATTGAAATCTTCTCATGCAAATGGTTTTGAGGAAGTAGTTATAGCAACTATATTGCGGGAGACATTGAAGGGCTTGGAGTATCTTCATTCTCATGGGCTCATACATCGAGATGTGAAAGCTGGAAATATTCTCCTTGATGCACGGGGGCATATTAAGTTGGGGGATCTTGGTGTATCTGCTTGCCTTTTTGATTCTGGTGATAGGCAGCGCACGAGGAATACATTTGTTGGGACGCCCTGCTGGATGGCACCTGAGGTTATGGAGCAACTACATGGTTATGACTTCAAGGCTGATATATGGTCTTTTGGTATAACTGCGCTGGAGCTTGCACATGGCCATGCTCCTTTTTCAAGGTATCCTCCAATGAAGGTGTTGCTGATGACCTTGCAAAATGCACCCCCTGGCCTTGATTATGAACGAGACAAGAAATTTTCGAAGTCTTTCAGGGAGATAATTGCTAGTTGTTTGGTTAAAGAACCTTCAAAACGGCCTTCTTCAAAGAAGTTGTTAAAGTATTCTTTTTTCAAGCAAGCCCGATCAAGTGATTATCTTGCACGGACCCTTTTGGAGGGGCTGCCTGCACTTGGTGACCGCATTAAAGCATTGAAGATAAAGGAAGAAGATATGCTAGCACAAAAGAAAATACCAGATGGGCAAATGGAAGAAATGTCACAGAACGAATATAAACGAGGAATTAGTAGCTGGAACTTCGATCTCGAAGATGTAAAGGCTCAGGCAGCCTTGATCCAGGATGGTTGTGATACTAGCTCTGATGGTAATCAAGGATGTAACTCAGCTTCCTCGAGTCCTCTGAATGTGCCAGAGAATGAAGCAATGCTGAACCAGTCAGCTCATCCTCCACTGATTGATTCAGCCAGTAATGAGGCAAAAGTCAGATGTGACAAATCTGATGATGAGTGTAAAGCCGCTAGTTCATGCTACGAACAACATATACAGAAATCTTCACCTCCTCGTGATCATTATGCAATCAATGAAGGTGAAAAGCCTAATACAGAAAGCAGTAAAGGAATTTTGGATAGCACAGGTAACCAGGGTCATAGAAAGGAGAATTCACAAGAAGCTAGCATACCACCTTCAAAAGGAGAGAGCATTGCAGGTCCTCAGGCAATAGATTGCTTGCTTTCTGAAGTTCCTTTGAAAGCAGCCAAGACATTAGCATCACAGAGCGAGGAACTTGATGAGAAGGCCAAAGCACCAGTTGTCCAGCAAAAAGGACGTTTCAAAGTCACGTCAGAGAATGTTGAGCTAGAAAAGGTCACACCATCCCCTGTACTTCAAAAGAGTCACAGCATGCAGGTGATTTCTTCCCAGCATACTCCTGTTCCTGTGCCATCAACTACTTCACCTATAGTACCTGACCTGACACCAACTCCCTCAAATTCTGTATTCCAAGCATTGCAGTCTCTTTTGCAGGCAAATATTGTTCAAAGGGATAATATTCTAAGTTTGATGAACCAACTTGCGAATGGTGACACTACAGGAGGGCTTACAGCTGCAATGGAGAAATCTATGCTCGAAGTGGCTCACGACAGGGAAAAGGATTTACTTAATGAAGTTTCTCATTTGCAATGGAGGCTTATATGTGCCCAAGGAGAGCTTCAAAAACAAAAAACCGACAGCAATGAGGTATACTTTACAGTACCCAATTAG 1968 43.9 MERKKYPIGAEHYTLYEEVGQGVSASVHRALCKPLNEIVAIKILDFERSNSDLNNISREAQIMNLVDHPNILKSNCSFVSDHSLWVVMPYMAGGSCLHILKSSHANGFEEVVIATILRETLKGLEYLHSHGLIHRDVKAGNILLDARGHIKLGDLGVSACLFDSGDRQRTRNTFVGTPCWMAPEVMEQLHGYDFKADIWSFGITALELAHGHAPFSRYPPMKVLLMTLQNAPPGLDYERDKKFSKSFREIIASCLVKEPSKRPSSKKLLKYSFFKQARSSDYLARTLLEGLPALGDRIKALKIKEEDMLAQKKIPDGQMEEMSQNEYKRGISSWNFDLEDVKAQAALIQDGCDTSSDGNQGCNSASSSPLNVPENEAMLNQSAHPPLIDSASNEAKVRCDKSDDECKAASSCYEQHIQKSSPPRDHYAINEGEKPNTESSKGILDSTGNQGHRKENSQEASIPPSKGESIAGPQAIDCLLSEVPLKAAKTLASQSEELDEKAKAPVVQQKGRFKVTSENVELEKVTPSPVLQKSHSMQVISSQHTPVPVPSTTSPIVPDLTPTPSNSVFQALQSLLQANIVQRDNILSLMNQLANGDTTGGLTAAMEKSMLEVAHDREKDLLNEVSHLQWRLICAQGELQKQKTDSNEVYFTVPN 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1338830 1345043 - Conep17aG0028200.1 Cone17ag0279 455756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0279 655 MobiDBLite consensus disorder prediction 433 464 - -
Cone17ag0279 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0279 655 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Cone17ag0279 655 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 647 IPR047173 GO:0043539(InterPro)
Cone17ag0279 655 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0279 655 Pfam Protein kinase domain 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0279 655 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Cone17ag0279 655 MobiDBLite consensus disorder prediction 352 372 - -
Cone17ag0279 655 MobiDBLite consensus disorder prediction 413 471 - -
Cone17ag0279 655 SUPERFAMILY Protein kinase-like (PK-like) 11 558 IPR011009 -
Cone17ag0279 655 FunFam serine/threonine-protein kinase BLUS1 isoform X1 94 327 - -
Cone17ag0279 655 CDD STKc_OSR1_SPAK 11 274 - -
Cone17ag0279 655 Gene3D Transferase(Phosphotransferase) domain 1 94 327 - -
Cone17ag0279 655 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Cone17ag0279 655 SMART serkin_6 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0279 K08835 - - cit:102627630 825.854
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0114 Cone-Chr11:504731 Cone17ag0279 Cone-Chr17:1338830 4.23E-190 dispersed
Cone11ag0941 Cone-Chr11:7685584 Cone17ag0279 Cone-Chr17:1338830 2.23E-243 dispersed
Cone17ag0279 Cone-Chr17:1338830 Cone18ag0623 Cone-Chr18:3194144 1.16E-248 dispersed
Cone17ag0279 Cone-Chr17:1338830 Cone20ag1129 Cone-Chr20:7711788 0 wgd
Cone17ag0279 Cone-Chr17:1338830 Cone7ag1037 Cone-Chr7:7980858 6.16E-17 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone14ag1056 . 1 681 MAP Kinase Kinase Kinase Kinase AT1G53165 60.0 4.4e-211 731.9
Cone9ag0187 . 1 687 MAP Kinase Kinase Kinase Kinase AT1G53165 59.1 2.7e-208 722.6
Cone6ag0161 . 9 685 MAP Kinase Kinase Kinase Kinase AT1G53165 58.8 6.1e-205 711.4
Cone13ag0901 . 259 515 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.4e-68 257.7
Cone19ag0899 . 260 516 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.4e-68 257.7
Cone9ag0187 . 1 686 MAP Kinase Kinase Kinase Kinase AT3G15220 61.8 2.5e-222 769.2
Cone14ag1056 . 1 680 MAP Kinase Kinase Kinase Kinase AT3G15220 61.3 4.7e-221 765.0
Cone6ag0161 . 9 684 MAP Kinase Kinase Kinase Kinase AT3G15220 61.5 1.3e-218 756.9
Cone13ag0901 . 260 515 MAP Kinase Kinase Kinase Kinase AT3G15220 52.5 5.4e-68 256.5
Cone19ag0899 . 261 516 MAP Kinase Kinase Kinase Kinase AT3G15220 52.5 5.4e-68 256.5
Cone13ag0901 . 1 833 MAP Kinase Kinase Kinase Kinase AT1G69220 60.1 1.1e-248 857.1
Cone19ag0899 . 8 834 MAP Kinase Kinase Kinase Kinase AT1G69220 59.1 2.0e-247 852.8
Cone6ag0161 . 23 271 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 2.2e-68 258.1
Cone9ag0187 . 23 271 MAP Kinase Kinase Kinase Kinase AT1G69220 52.4 2.2e-68 258.1
Cone14ag1056 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.4 9.2e-67 252.7
Cone18ag1363 . 3 663 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 3.7e-247 851.7
Cone11ag0114 . 19 679 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 7.0e-246 847.4
Cone8ag0549 . 8 724 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 4.4e-246 848.2
Cone12ag0550 . 8 723 MAP Kinase Kinase Kinase Kinase AT4G24100 64.4 6.4e-245 844.3
Cone12ag0550 . 11 724 MAP Kinase Kinase Kinase Kinase AT4G10730 65.7 5.3e-249 857.8
Cone8ag0549 . 11 725 MAP Kinase Kinase Kinase Kinase AT4G10730 65.8 1.2e-248 856.7
Cone20ag1129 . 4 368 MAP Kinase Kinase Kinase Kinase AT1G70430 60.5 4.0e-128 456.1
Cone17ag0279 . 4 348 MAP Kinase Kinase Kinase Kinase AT1G70430 62.9 2.0e-127 453.8
Cone18ag0623 . 4 479 MAP Kinase Kinase Kinase Kinase AT1G70430 50.6 6.4e-126 448.7
Cone11ag0941 . 4 407 MAP Kinase Kinase Kinase Kinase AT1G70430 55.4 7.1e-125 445.3
Cone12ag0550 . 5 353 MAP Kinase Kinase Kinase Kinase AT1G70430 58.5 8.4e-118 421.8
Cone8ag0549 . 5 367 MAP Kinase Kinase Kinase Kinase AT1G70430 55.9 8.7e-115 411.8
Cone17ag0279 . 1 631 MAP Kinase Kinase Kinase Kinase AT1G79640 59.1 7.0e-206 714.5
Cone20ag1129 . 1 631 MAP Kinase Kinase Kinase Kinase AT1G79640 58.1 2.0e-205 713.0
Cone18ag0623 . 1 655 MAP Kinase Kinase Kinase Kinase AT1G79640 57.8 1.3e-204 710.3
Cone11ag0941 . 1 655 MAP Kinase Kinase Kinase Kinase AT1G79640 57.5 2.8e-199 692.6
Cone11ag0114 . 20 342 MAP Kinase Kinase Kinase Kinase AT1G23700 59.5 8.9e-102 368.2
Cone18ag1363 . 4 326 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 4.1e-99 359.4
Cone11ag0941 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.6 2.4e-86 317.0
Cone17ag0279 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.6 6.9e-86 315.5
Cone18ag0623 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.0 1.2e-85 314.7
Cone20ag1129 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.0 3.4e-85 313.2
Cone12ag0550 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.2 3.2e-75 280.0
Cone4ag0304 . 15 493 MAP Kinase Kinase Kinase Kinase AT4G14480 56.6 1.0e-137 487.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82251 PF00903 Glyoxalase 6.30E-11 CL0104 Cone PK