Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0284 ATGTCTACTTGCAAGAGAAAACCTTCTTCATTAATGTATCGCCAATCTTCGTACAACTCTCTCTACGTCAACCCTCTCACCGAGCTCCGTCACAGCCGTAGCTGCAGCGACGGCGGAGGTGGAAGACTCCATGGAGACCAGTGGCCAGAACGGAATAAGGAGAACGCAATCCCAAACATGAAGAGATCAAACAATAATGCAGCGTTTGAGGACAAAGAAAATGAAACTCCTCCCCCAAATGGGGTTTCTTCGAAACCAAGAAATTTCTCAAATTTCAAGTCTATGTCAACCGGAGGAGTGCTGAAGCCATCCTCACTTCAGCTCTGTATGCAAATCAACGAGCCGGACAAGGTCTTCGGGTCCAAGCTGTGGGACCCTGTCAGCTCAGAGACCTCGGGGTCCTTGAACATCTGGGATTTTTCAGATTCGGAGGCCGCTCCAGCCTCGTCTTGGTCTACTCTGCCCAATAGGACATTGCTGTGTAGGCCATTGCCCTTGGATATAGGAAGGTGCACTTGTGTGATTGTGAAGGAAGCATTGCCGAATGGGATTCATGGAGGCACTCTTTATTCTCTATACACCAATGAAGGAAAGGGGAGACAAGACCGGAAACTAGCCGTGGCTCATCATAAGCGGCGAAACGGGAAATCTGTGTTCACCATAGCTCAGAATACTAAAGGGATATCATCTAACACAGATGACGGGTATATCGGATCCGTAACAGCAAACCTCATGGGCTCAAAGTATCATATATGGGATCAGGGAAGCCGTCTCAAAACTCAAACCACTCAGTCTAAAGCGCTCCTCGCCGTTGTAATATTCACTCCTACGATAACAACATTGATGGGAAGTCATAGAAGCATAAGAGCATTTGTACCGAAACATCAATCTATGCTGCTAAAGAATACAAACCAAGGGCAACATATCAATGGATTGCCGTTATTGGATTGGAAGGAACGGAGTGACAAAGTTCATCGGCTCATTTCACGGGTTCCTTACTACAATAAGGTTTCGAAGCAATATGAATTGGACTACAGAGACAGAGGAAGAGCAGAGCTTAGAATCCAGAGCTCAGTAAAGAACTTTCAGTTAACATTAGAGGAAAATGGAAAGCAGACCATCCTACAGTTAGGAAGGGTTAGGAAATCTAAGTATGTGATGGATTACAGATACCCCTTGACGGCATACCAAGCGTTCTGCATGTGTTTAGCTTCCATAGATTCCAAGCTTTGCTGCACAGTCTGA 1245 45.94 MSTCKRKPSSLMYRQSSYNSLYVNPLTELRHSRSCSDGGGGRLHGDQWPERNKENAIPNMKRSNNNAAFEDKENETPPPNGVSSKPRNFSNFKSMSTGGVLKPSSLQLCMQINEPDKVFGSKLWDPVSSETSGSLNIWDFSDSEAAPASSWSTLPNRTLLCRPLPLDIGRCTCVIVKEALPNGIHGGTLYSLYTNEGKGRQDRKLAVAHHKRRNGKSVFTIAQNTKGISSNTDDGYIGSVTANLMGSKYHIWDQGSRLKTQTTQSKALLAVVIFTPTITTLMGSHRSIRAFVPKHQSMLLKNTNQGQHINGLPLLDWKERSDKVHRLISRVPYYNKVSKQYELDYRDRGRAELRIQSSVKNFQLTLEENGKQTILQLGRVRKSKYVMDYRYPLTAYQAFCMCLASIDSKLCCTV 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1364840 1367008 + Conep17aG0028700.1 Cone17ag0284 455761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0284 414 SUPERFAMILY Tubby C-terminal domain-like 148 413 IPR025659 -
Cone17ag0284 414 Gene3D Tubby Protein; Chain A 153 413 IPR025659 -
Cone17ag0284 414 PANTHER TUBBY-RELATED 105 412 - -
Cone17ag0284 414 MobiDBLite consensus disorder prediction 32 64 - -
Cone17ag0284 414 Pfam Tub family 161 408 IPR000007 -
Cone17ag0284 414 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cone17ag0284 414 PRINTS Tubby superfamily signature 236 260 IPR000007 -
Cone17ag0284 414 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cone17ag0284 414 PRINTS Tubby superfamily signature 391 413 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0284 Cone-Chr17:1364840 Cone4ag0175 Cone-Chr4:819037 1.94E-10 dispersed
Cone17ag0284 Cone-Chr17:1364840 Cone7ag0180 Cone-Chr7:753931 2.59E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45018 PF13259 DUF4050 1.20E-07 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0284 K19600 - csv:101216780 564.688