Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0285 ATGGTGAAGATCTCACACAGAAACCAGAAGAGCTCTGCAAATGATAATACTAATAGTAGTAATAATAAACAGGTGGCCGAGATGAAGGTGAAGAAGACTCGTAAAACTGTCCCACGTGATGCTCCCATGCAGCGCAGCTCTATTTACCGTGGCGTCACAAGGCATCGATGGACGGGTAGATATGAGGCGCATTTATGGGACAAGAACTGTTGGAACGAGTCACAGAACAAGAAAGGAAGACAAGGTGCATATGATGATGAGGAAGCAGCAGCTCGTGCTTATGACTTGGCTGCATTGAAATATTGGGGGCCAGATACCATTCTTAATTTCTCGTTATCGGTGCATGAAGAGGAGTTGAAAGAAATGGAGGGACAATCAAGAGAAGAATACATTGGATGTTTGAGGAGAAAAAGCAGTGGTTTCTCTCGTGGAGTTTCGAAATATCGAGGAGTTGCAAGGCATCACCATAATGGAAGATGGGAAGCTCGGATTGGCAGAGTGTTTGGTAATAAATATCTTTATCTGGGAACATACGCTACCCAAGAAGAAGCGGCCACAGCTTATGACATGGCGGCAATTGAATATCGCGGCATTAATGCCGTCACAAACTTCGACCTCAGCCGCTACATTAAGTGGCTCCGTCCTAATTACAGCCCCGACAGTCCAAATGACCAAAATAACCCAGTTAACCAAGAAACTACACCAAATGACTCTATTAACATTGCTAACATTCATACTCAAGTATTAAATTACCCTTGCAGTCTGTCATCCCACCCTGATTGTGGAACCACTGTAGTGCCACCATGTTCGGGCGGTGGTGCAGCCACCTCCACCTCTGCGTCATCAGCTTTGGGGCTTCTTCTGCAGTCAAAGAAGTTCAAGGAAATGTCGGAAAGAATATCAGCAGCTGACTCTCCACCCACACCGTTATCGGAGTATTCAAACTCATCGATACGACGGAGCATTCCGGATGATATCCAGACTTACTTCGACTTTCAAGAAGATGGTAACTACAGAGAGGATCATGATGACATCATGACTAGTACTATTTTTGGCGACTTGAACTCATTTATCAATATTTCATTATGA 1089 44.44 MVKISHRNQKSSANDNTNSSNNKQVAEMKVKKTRKTVPRDAPMQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAARAYDLAALKYWGPDTILNFSLSVHEEELKEMEGQSREEYIGCLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGINAVTNFDLSRYIKWLRPNYSPDSPNDQNNPVNQETTPNDSINIANIHTQVLNYPCSLSSHPDCGTTVVPPCSGGGAATSTSASSALGLLLQSKKFKEMSERISAADSPPTPLSEYSNSSIRRSIPDDIQTYFDFQEDGNYREDHDDIMTSTIFGDLNSFINISL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1367243 1369783 - Conep17aG0028800.1 Cone17ag0285 455762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0285 362 MobiDBLite consensus disorder prediction 1 26 - -
Cone17ag0285 362 CDD AP2 146 207 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0285 362 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0285 362 Pfam AP2 domain 146 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0285 362 FunFam AP2-like ethylene-responsive transcription factor 47 113 - -
Cone17ag0285 362 MobiDBLite consensus disorder prediction 217 236 - -
Cone17ag0285 362 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0285 362 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0285 362 MobiDBLite consensus disorder prediction 1 42 - -
Cone17ag0285 362 FunFam AP2-like ethylene-responsive transcription factor 146 207 - -
Cone17ag0285 362 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0285 362 Gene3D AP2/ERF domain 48 113 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0285 362 MobiDBLite consensus disorder prediction 218 236 - -
Cone17ag0285 362 SUPERFAMILY DNA-binding domain 47 113 IPR016177 GO:0003677(InterPro)
Cone17ag0285 362 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677(InterPro)
Cone17ag0285 362 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 226 - -
Cone17ag0285 362 SMART rav1_2 147 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0285 362 SMART rav1_2 48 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0285 362 ProSiteProfiles AP2/ERF domain profile. 48 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0939 Cone-Chr11:7668317 Cone17ag0285 Cone-Chr17:1367243 1.21E-118 dispersed
Cone17ag0285 Cone-Chr17:1367243 Cone18ag0626 Cone-Chr18:3211989 6.98E-108 dispersed
Cone18ag0595 Cone-Chr18:2992268 Cone17ag0285 Cone-Chr17:1367243 1.91E-09 transposed
Cone17ag0285 Cone-Chr17:1367243 Cone20ag1123 Cone-Chr20:7687688 6.89E-212 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45019 PF17181 EPF 3.60E-20 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0285 K09285 - vvi:100255268 424.476