Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0307 ATGGAGCTTGGATTAAGGTTGGGAGACAGTACTACAACTCCTAAGGGGTCGTTTGGCTTCTCGGAAAATCTTCGAGAAAAAAGCAGGAGTGCTTCTGCTTCTTCTCATAAAGCTCATCTAGGCTTTTGCATGAGCTTATCCATAACTCCTCTCTCCACCACAGATGATCATCAAGACGCACCGATTCAGCTCGATCTTCTTCCTCACACTCCTGTTCTTCGCAACTCATCATGGAGTTCGGAGGGAGCGGCGGGGGGTTTAGACGTGAATCGAGCTCCGGCGGTGGCGGCGGAGGATGGGGATCAGGATGGAGAAGGATCGCCGAACAGTGCAGCTTCGTCGTTTCAGATGGAGTTTTGCATGTTCAGATCACCGGCAGGGTCCGGTGGGAACGACGGCGTAGCAGATCATCCGACGGAGAGGGCTTGTTCAAGAGGTAGCGATGAAGATGAGAGCGGTCCTAATACCAGAAAGAAACTCAGGCTCTCTAAACAACAATCCGCCTTTCTTGAAGAAAGCTTCAAAGAACACAACACCCTCAATCCCAAGCAGAAACTTGCACTGGCAAAGCAGCTTAATCTACGTCCACGACAAGTGGAAGTCTGGTTTCAAAATAGAAGAGCGAGGACGAAACTGAAACAAACGGAGGTGGACTGCGAGTATCTGAAGAGGTGTTGCGAAACGTTGACGGAAGAGAACAGAAGGCTCCAAAAGGAGCTTCAAGATTTGAGAGCCTTGAAGTCTACAAACTCTTTCTACATGCAATTACCGGCCACTACTCTTACCATGTGCCCTTCTTGTGAACGTGTCGCCGCCACTACTTCCACCTCCGCCGCCGCCTCCGTTGCAGCAACAACCACCACTACTAACATCACTACTAAAGCATCTGGGTTTTCTTTAATTACTAGACCCAGACCGTCTACTCCGTTCCATAACGCCACCCACCAAACCAAACCTTCGTGA 963 49.95 MELGLRLGDSTTTPKGSFGFSENLREKSRSASASSHKAHLGFCMSLSITPLSTTDDHQDAPIQLDLLPHTPVLRNSSWSSEGAAGGLDVNRAPAVAAEDGDQDGEGSPNSAASSFQMEFCMFRSPAGSGGNDGVADHPTERACSRGSDEDESGPNTRKKLRLSKQQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQDLRALKSTNSFYMQLPATTLTMCPSCERVAATTSTSAAASVAATTTTTNITTKASGFSLITRPRPSTPFHNATHQTKPS 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1456852 1458059 + Conep17aG0031100.1 Cone17ag0307 455784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0307 320 Coils Coil 219 249 - -
Cone17ag0307 320 SMART HOX_1 155 217 IPR001356 GO:0003677(InterPro)
Cone17ag0307 320 MobiDBLite consensus disorder prediction 126 161 - -
Cone17ag0307 320 MobiDBLite consensus disorder prediction 138 158 - -
Cone17ag0307 320 CDD homeodomain 157 214 IPR001356 GO:0003677(InterPro)
Cone17ag0307 320 SUPERFAMILY Homeodomain-like 143 214 IPR009057 -
Cone17ag0307 320 ProSiteProfiles 'Homeobox' domain profile. 153 213 IPR001356 GO:0003677(InterPro)
Cone17ag0307 320 Pfam Homeodomain 157 211 IPR001356 GO:0003677(InterPro)
Cone17ag0307 320 FunFam Homeobox-leucine zipper protein 18 143 218 - -
Cone17ag0307 320 MobiDBLite consensus disorder prediction 10 24 - -
Cone17ag0307 320 MobiDBLite consensus disorder prediction 1 24 - -
Cone17ag0307 320 Pfam Homeobox associated leucine zipper 213 247 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag0307 320 Gene3D - 161 211 - -
Cone17ag0307 320 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 39 288 IPR050762 -
Cone17ag0307 320 ProSitePatterns 'Homeobox' domain signature. 188 211 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone17ag0307 320 CDD bZIP 206 245 - -
Cone17ag0307 320 SMART halz 213 256 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0552 Cone-Chr11:3091504 Cone17ag0307 Cone-Chr17:1456852 2.79E-60 dispersed
Cone13ag0523 Cone-Chr13:5522121 Cone17ag0307 Cone-Chr17:1456852 1.23E-84 dispersed
Cone17ag0307 Cone-Chr17:1456852 Cone19ag0475 Cone-Chr19:3895198 1.18E-82 dispersed
Cone17ag0307 Cone-Chr17:1456852 Cone20ag1102 Cone-Chr20:7605619 8.36E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45020 PF03030 H_PPase 2.40E-257 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0307 K09338 - rcu:8289299 300.441