Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0339 ATGAATGACAATAGACAAATGGAGATAAATTACACGGAGACCGGCTTTCCTTACCTAGGGTCCGGAAGTTTTATCAACTTCTTCGAAGGCTTTAACCATGTTCCTCAGCACTATACTAATGCAGGTCCTAGCCATGATCAGGAAAGTGTATACTGGTCGATGAATACGAACTCATACAAATTCGAGGAATTCAGTCCGGGCAGTACCTCTTATTACAGCCCTTATGAGGAAAGTTGTTATATGCCTAGAAGTGATATGGGTGATGCTAGGGCTTGGGAGTATCATTTGGCTGAATCAGCCGTTCACCATGTCGAAGATCCTATAATTATGGAATCACCATCCAGAGTGGATGATGTCATCGATGAACATTCTACGCCTGAAGAATGCATTGTGACAAGTGAGCAGAGTTCAAGTAGTTCTCAAGCTGTATGGCAAGAGGACATTGATCCCGATAACATGACCTACGAGGAATTACTGGACTTAGGGGAGGCAATAGGAAGTGAAGGGAAAGGTCTTTCTAAGGAACTTATAAACTTGCTTCCTACTTCCAAGTACAAGTTCAGTGACATCTTCTCCAGGAAAAAGTCCAGCGACAGGTGTGTGATTTGTCAGATGAGGTATAAACGAGGGGATCGGCAAATGAAATTGCCATGCAAGCATCTCTATCATGATGAATGCATCACCAAATGGCTTACCATTAACAAAATATGTCCGGTTTGCAACGTTGAAGTATTTGGAGAGGAATCATCAAGGCATTGA 759 42.56 MNDNRQMEINYTETGFPYLGSGSFINFFEGFNHVPQHYTNAGPSHDQESVYWSMNTNSYKFEEFSPGSTSYYSPYEESCYMPRSDMGDARAWEYHLAESAVHHVEDPIIMESPSRVDDVIDEHSTPEECIVTSEQSSSSSQAVWQEDIDPDNMTYEELLDLGEAIGSEGKGLSKELINLLPTSKYKFSDIFSRKKSSDRCVICQMRYKRGDRQMKLPCKHLYHDECITKWLTINKICPVCNVEVFGEESSRH 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1590414 1592104 + Conep17aG0034300.1 Cone17ag0339 455816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0339 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 245 IPR013083 -
Cone17ag0339 252 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Cone17ag0339 252 SMART ring_2 200 240 IPR001841 -
Cone17ag0339 252 FunFam E3 ubiquitin ligase BIG BROTHER 162 245 - -
Cone17ag0339 252 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 245 IPR033276 GO:0004842(PANTHER)|GO:0004842(InterPro)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0046621(InterPro)
Cone17ag0339 252 Pfam Ring finger domain 199 241 IPR001841 -
Cone17ag0339 252 SUPERFAMILY RING/U-box 199 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0430 Cone-Chr14:2014761 Cone17ag0339 Cone-Chr17:1590414 1.91E-10 dispersed
Cone17ag0339 Cone-Chr17:1590414 Cone18ag0109 Cone-Chr18:571020 8.41E-57 dispersed
Cone17ag0339 Cone-Chr17:1590414 Cone20ag1071 Cone-Chr20:7467830 2.12E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0339 K19045 - gmx:100785290 317.39