Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0342 ATGGCCATGGCTGGGCGTATGAGATCGAGCCTTTCTCTCCTCAGCAAGTTTCTCAAATCCGATTCAGCATCCACTCAGAGATCCACCCTCGAACGAGCGCTACTATGCCCTACTTTCACCAATGCGGAGTCTTCCAGGAACTATGCCACCGCATCTGGGAAGAAGGAAGAAAAAGTGAAGGTCCCTCTGGCTCTGTATGGGGGTACTGGAAACTATGCGTCCGCCTTGTATCTTGCTGCAGTAAAAGCTAATGCACTGGACAAGGTTGAGTCTGAGCTTCTTGATCTTGTTGAGGCTATAAATGAAAGTCCCAGATTTTCTCAGTTCACGAAGGATCCAACTGTGCGTCCAGATGTTAGGGTCAATGCTATTAAAGAAATATCTGCTGAAGCTAAATTTTCAGAAGTTACAAAGAGTTTCTTGCTTGTGTTGGCTGCGAATGGAAGGCTGAAATTTGTAGACAGCATATCAAAGAGATTTCAGGAGTTAACAATGGCTCATAGGGGAGAAGTGAAAGCCATCGTGACAACGGTTATTCCTCTTCCAGCAGAAGAGGAGAAAGAACTGAAGGAGACACTGCAAGATATCCTTGGTCAAGGGAAGAAGGTTAAGCTTGAACAGAAGATTGATCCAAGAATTCTCGGCGGTCTAGTGGTGGAGTTTGGAGATAAGGTCTTCGACATGTCCATTAAGACCCGAGCACGCCAGATGGAGAGGTTCTTGCGAGAACCCATTAACATTGGCAACCTCTAG 753 46.22 MAMAGRMRSSLSLLSKFLKSDSASTQRSTLERALLCPTFTNAESSRNYATASGKKEEKVKVPLALYGGTGNYASALYLAAVKANALDKVESELLDLVEAINESPRFSQFTKDPTVRPDVRVNAIKEISAEAKFSEVTKSFLLVLAANGRLKFVDSISKRFQELTMAHRGEVKAIVTTVIPLPAEEEKELKETLQDILGQGKKVKLEQKIDPRILGGLVVEFGDKVFDMSIKTRARQMERFLREPINIGNL 250
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
17 1599672 1602230 + Conep17aG0034600.1 Cone17ag0342 455819
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0342 250 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 203 222 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Cone17ag0342 250 NCBIfam ATP synthase F1 subunit delta 71 240 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone17ag0342 250 Hamap ATP synthase subunit delta [atpD]. 64 243 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone17ag0342 250 PANTHER ATP SYNTHASE DELTA CHAIN 1 244 IPR000711 GO:0000274(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cone17ag0342 250 Gene3D - 69 161 IPR026015 -
Cone17ag0342 250 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 69 170 IPR026015 -
Cone17ag0342 250 PRINTS ATP synthase delta subunit signature 216 234 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone17ag0342 250 PRINTS ATP synthase delta subunit signature 201 216 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone17ag0342 250 PRINTS ATP synthase delta subunit signature 149 163 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone17ag0342 250 PRINTS ATP synthase delta subunit signature 138 149 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone17ag0342 250 PRINTS ATP synthase delta subunit signature 68 87 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone17ag0342 250 Pfam ATP synthase delta (OSCP) subunit 70 239 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0342 Cone-Chr17:1599672 Cone20ag0682 Cone-Chr20:4212310 7.03E-12 dispersed
Cone17ag0342 Cone-Chr17:1599672 Cone20ag1069 Cone-Chr20:7462213 1.57E-155 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0342 K02137 - csv:101206351 342.043