Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0346 ATGGAACCAATAGGTGGCTCTGCGGAAAAGACCGAGAAGAGCGTGGCTGTGTGCCAAATCTGTGGAGATAATGTTGGGAAGACTGTGGATGGTGAACCATTTATTGCCTGCAATGTCTGTGCATTTCCTGTATGCAGGCCATGTTATGAGTATGAGAGGAAGGATGGAAACAAGTCCTGTCCCCAGTGCAAAACGATGTACAAGAGACTCAAAGGAAGCCCTGCAATTCTTGGTGATGAAGAAGAGGATGATGAGGTTAATGATAGCTTGAGTGATATCAATTTTGCTTCAGAAAGTCAGATTCAGAAGCAGAAGATTGCAGAGCGCATGTTGAGCTGGCAGACGACATATGGAAGGGTGGAGGATGTTGGGCATCCAAATCAAGACAAAGAGGTTCCTCCAAATCAGATTCCTTTGCTCACCAACGGACATGAGGTTTCTGGAGAACTATCTGCTGCATCACCTGAGCGCCTTTCCATGGCATCTTCTGGAATTCCTGCTAATGGGAGGATTGTGGAACCTGTGAGGGACTTTGTTTCACCATTAGGTAATGTAGCTTGGAAAGAGAGAGTTGATGGCTGGAAGATGAAGCAGGAGAAGAATGTAGCCCCAATGAGCACTGGCCAGGCTGCATCGGAAAGGGGGCTTGGAGAGATTGATGCCAGTACTGATGTGCTTGTAGATGACTCGTTGCTAAATGATGAAGCACGACAGCCTCTTTCGAGAAAAGTTTCTGTTCCATCATCTAGGATAAACCCCTACAGGATGGTCATTGTGTTGCGGCTCATTATCATTTGTGTTTTTCTACATTATCGAATAACGAATCCTGTGCGAAACGCCTATCCCCTGTGGTTAATATCTGTTATCTGTGAGATTTGGTTTGCCATCTCCTGGATATTAGATCAGTTTCCAAAGTGGCTTCCAGTAAACCGTGAGACATATCTTGATCGGCTGGCTTTAAGATATGACAGGGAAGGTGAACCATCACAGTTAGCAGCTGTGGACATATTTGTGAGTACTGTCGACCCATTGAAGGAACCTCCTCTTGTAACAGCCAATACTGTGCTTTCTATTCTTGCGGTTGATTACCCAGTTGACAAGGTCTCGTGCTATGTCTCTGATGATGGAGCTGCTATGTTAACATTTGAAGCTCTGTCTGAAACATCAGAATTTTCCAGGAAATGGGTACCTTTCTGCAAAAAGTACAGCATCGAGCCTCGAGCTCCAGAATGGTACTTTTCACAGAAAGTTGACTACCTGAAAGATAAAGTGCATCCATCATTTGTCAAAGATCGTAGGGCCATGAAGAGAGAATATGAGGAATTTAAAGTTCGAGTTAATGGTCTGGTGGCGAAGGCACAAAACATTCCTGAAGAAGGATGGATTATGCAAGATGGAACACCATGGCCTGGAAATAACACAAGGGACCATCCAGGAATGATTCAGGTTTTCTTAGGTCAAAGTGGAGGATTGGATGCTGAAGGAAATGAATTGCCACGTTTAGTCTATGTATCCCGTGAAAAGCGTCCTGGTTTCCAACATCACAAGAAAGCTGGTGCTATGAATGCACTTGTTCGGGTGTCAGCAGTACTCACCAATGGCCCTTTCTTGTTGAATCTTGATTGTGATCACTACATAAACAATAGCAAGGCCTTGAGAGAAGCGATGTGCTTTATGATGGACCCCAATCTTGGGAAGTATGTCTGTTATGTTCAGTTTCCACAAAGATTTGATGGTATTGATAAAAATGATAGATATGCCAACCGAAATACTGTCTTTTTCGATATAAATTTAAGAGGTTTGGATGGCATCCAAGGCCCTGTTTATGTGGGTACTGGATGTGTCTTCAACAGAACTGCTTTGTATGGCTATGAACCACCTCTCAAACCTAAGCGTAAGAAAGCTGGATTTCTTTCTTCACTCTGTGGTGGGTCCCGAAAGAAAAATTCAAAGTCAAATAAAAAGATCTCAGACAAGAAGAAATCCGGCAAGCATGTGGATCCTACTGTCCCAATTTTCAGTCTTGAAGACATAGAAGAAGGGGTGGAAGGTGCAGGATTTGATGATGAAAAGGCGATACTTATGTCGCAAATGAGCTTGGAGCAAAGGTTTGGTCAGTCTGCTGTTTTTGTTGCTTCTACCCTTATGGAAAATGGTGGTGTTCCTCAATCTGCAATCCCAGAAACTCTTCTTAAAGAGGCTATTCATGTTATCAGTTGTGGTTACGAGGATAAAACAGACTGGGGAACTGAGATCGGATGGATCTATGGCTCTGTCACTGAAGATATTCTTACAGGATTCAAAATGCATGCACGTGGCTGGCGCTCGATTTATTGCATGCCTAAACGCCCTGCCTTTAAAGGATCTGCTCCTATCAATCTCTCTGATCGATTGAACCAAGTGCTTAGGTGGGCCCTTGGTTCCGTTGAAATTCTACTAAGCAGACATTGTCCTATCTGGTATGGTTATGGTGGTAGACTCAAATGGCTCGAAAGGTTTGCCTATGTTAACACTACCATTTATCCAATTACTGCAATCCCTCTCGTCATGTATTGTACTCTCCCAGCTGTCTGTCTCCTCACAAACAAGTTCATTATACCACAGATTAGTAACATTGCTAGCATATGGTTCATCTCCCTCTTCCTTTCCATCTTTGCAACGGGTATTCTTGAGATGAGATGGAGTGGGGTCGGAATCGACGAGTGGTGGAGAAACGAACAGTTCTGGGTCATAGGCGGAGTTTCAGCTCATCTCTTTGCCGTTTTTCAAGGTCTCCTCAAAGTCCTTGCCGGAATTGACACAAACTTCACTGTTACATCTAAAGCATCAGATGAGGATGGGGATTTTGCCGAGCTCTACTTGTTCAAATGGACAACCCTTCTTATCCCTCCAACCACTCTCCTTATCATAAATTTGGTAGGGGTAGTGGCCGGAATATCCTACGCGGTCAATAGTGGGTACCAGTCATGGGGCCCACTTTTCGGTAAGCTGTTCTTCGCCTTCTGGGTGATTGTTCATCTATATCCTTTCCTCAAAGGTCTGATGGGTAGACAGAATCGGACGCCTACCATTGTTGTTGTGTGGTCTGTTCTTCTTGCGTCGATTTTTTCGCTGTTGTGGGTCCGGATTGATCCGTTTACTACTTCAGTTAGAGGTCCGGACACTGAGCAGTGTGGTATTAACTGCTGA 3189 44.28 MEPIGGSAEKTEKSVAVCQICGDNVGKTVDGEPFIACNVCAFPVCRPCYEYERKDGNKSCPQCKTMYKRLKGSPAILGDEEEDDEVNDSLSDINFASESQIQKQKIAERMLSWQTTYGRVEDVGHPNQDKEVPPNQIPLLTNGHEVSGELSAASPERLSMASSGIPANGRIVEPVRDFVSPLGNVAWKERVDGWKMKQEKNVAPMSTGQAASERGLGEIDASTDVLVDDSLLNDEARQPLSRKVSVPSSRINPYRMVIVLRLIIICVFLHYRITNPVRNAYPLWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFSRKWVPFCKKYSIEPRAPEWYFSQKVDYLKDKVHPSFVKDRRAMKREYEEFKVRVNGLVAKAQNIPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKYVCYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKRKKAGFLSSLCGGSRKKNSKSNKKISDKKKSGKHVDPTVPIFSLEDIEEGVEGAGFDDEKAILMSQMSLEQRFGQSAVFVASTLMENGGVPQSAIPETLLKEAIHVISCGYEDKTDWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYVNTTIYPITAIPLVMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIINLVGVVAGISYAVNSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTTSVRGPDTEQCGINC 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1624001 1630827 - Conep17aG0035200.1 Cone17ag0346 455823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0346 1062 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 246 1031 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cone17ag0346 1062 Pfam Cellulose synthase 334 1055 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cone17ag0346 1062 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 457 625 IPR029044 -
Cone17ag0346 1062 SUPERFAMILY Nucleotide-diphospho-sugar transferases 348 875 IPR029044 -
Cone17ag0346 1062 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 92 IPR013083 -
Cone17ag0346 1062 CDD mRING-HC-C4C4_CesA 17 65 - -
Cone17ag0346 1062 MobiDBLite consensus disorder prediction 639 665 - -
Cone17ag0346 1062 FunFam Cellulose synthase 451 625 - -
Cone17ag0346 1062 SUPERFAMILY RING/U-box 11 85 - -
Cone17ag0346 1062 Pfam Zinc-binding RING-finger 14 84 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0044 Cone-Chr10:281158 Cone17ag0346 Cone-Chr17:1624001 0 dispersed
Cone17ag0346 Cone-Chr17:1624001 Cone3ag0058 Cone-Chr3:348716 0 dispersed
Cone17ag0346 Cone-Chr17:1624001 Cone18ag0800 Cone-Chr18:4711339 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0346 K10999 - mdm:103438406 1940.24