Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0385 ATGGAGACTAGATTTGGAGGTGAAGCTGCTCCTCCTCATCATCATCAATTATACAACATGAATTCTGTTGACTTAAGGGCAGTAGGGAAGAGGACTCTTGAGTGGGATTTAAACGATTGGAAATGGGATGGTGATCTTTTCATTGCTACCCCACTAAACCCGGTCCCACCTCATCCCCATTTCCCCTCCGGGTCTGAAATTCCAGCACCCATAGGAGGAGGAGGAGGCTCATCTAACAGCTCTTCCTCTTGCTCTGAAGAACTCAATTTAGGGAGTGAGAAAGAGAAGAAGGAATCGATGGAGAAGAAGAAGAGGAGAGTTGTTGTAGTGAAGGATTATAGTTCGAATGATGAAGCAGCTACCCTTGGGTTAAATCTTGGAAGAAATGGGTTTCAGGTGGGAGATAGAGAGGCAGTTGGGAATTGGGAGGAAATGAGTGGGAAGAAGACCAAATTGGTGGCCGGAAATTCTAGCCGTTCTATTTGCCAGGTGGAGGATTGTGGTGCTGATCTGAGCGGTGCTAAGGATTATCATAGAAGGCATAAAGTTTGCGAGATGCATTCCAAAGCTAGTCGGGCACTTGTCGGAAATGTTTTGCAACGGTTTTGTCAGCAGTGTAGTAGGTTTCATGTTCTGCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGGTTAGCTGGTCACAATAAACGGAGGAGAAAAACAAATCCCGAAACTGCTGTTAACACAAGTTCTTCAGTAGATAATCAGAATAGTGGCTATCTAATTATAAGTCTGTTAAGGATACTTTCTAACATGCATTCCCAGAAGTCGGACCAGGCAGTGGATCAAGATCTGCTATCTCATCTCTTAAGGAGCCTTGCATCATCTCAAACTAATGAAGATGGGAGGGAAAACCTGTCAAGTCTTTTGGAGAAATCTCAAAATTTCCGAAACAACGGGAGATTAATTGGCTCTTCCGAATTAGTATCCACATTTCCCTCAAACTGTCCTCAGGCCCCCCCAAGGCCATCTAAACCACATAACAGATTAACTTTACTTGAGACACCACAACAAGGTAAGCATGCTCATAATAATGCTCAAGAAGAAGATGCACAAATCACTCTATCTTCTGTAAAACCGAGCATAGTAAACAACCCTCCAGCTTATTCAGAAGTTAGAGACAGTGCTGTAGGGATAAGCAAGGTCAATAAGTTTGACTTGAATGACATTTTTATTGACTCGGATGATGGCATGGAGGATATGGAGAGGTCTCATGCCCCTACAAACTTGGGGATGGGTTCTCTTGGGCGCCCTTCATGGATTCAAATTGATTCTCATCAGTCAAGTCCTCCTCGACCTAGTGGAAATTCAGATTCGCCTTGTACCCAATCTCCTTCTAGCTCTAATGGAGAAGCCCAGAGTCGTACTGATCGGATTGTGTTCAAACTATTCGGGAAAGAACCGAGTGACTTTCCTATGGTTCTGCGAACACAGATTCTTGATTGGTTATCTCACAGCCCTACTGACATTGAAAGTTACATTAGGCCTGGTTGTGTTATTCTGACAATTTATCTACGCCAAACAGCGATTGCGTGGGATGAACTTTGCTATGATCTGAGATCTAGTTTGAATAAGCTTCTCCAAGCCTCAGATGATGATGATACTTTTTGGAGAACCGGATGGGTTTATGTTAGGATTCAAAATCAAATTGCATTTATCCATCATGGTCAGATTGTTCTGGACAGATCTCTATCTCTTAAACCTAATCATCATAGTAAAATCATAAGTCTAAAACCCATTGCAATAACGGCATCTGACAAGGCTCGTATTTCAGTTAGAGGCTCGAATTTGTTCGGACCTGCAACCAGGTTGCTCTGTGCACTAGGAGGAAAATATCTGATTCAGAAAGATGTTGATGAATCAATGATCAATTTTGAGAGCTCGGAAAAGGAAGATGACCTCCAATGCATCAGCTTTTCTTGCTCTGTTCCTATAGTGAATGGAAGGGGATTCATTGAGGTTGAAGATCATGGTTTAAGTAGCAGCTTCTTTCCTTTCATTGTAGCAGAGGAGGATGTTTGTTCAGAGATTCGAATTCTCGAAACTGCATTGGGGTTTACCGAAATGTATTCAGAATCTTCGGATTCTGTGGAAGAAGGTAGAAAGATGGCAGAAGTACGAAGTCAAGCCATAGACTTCATAAATGAAATGGGTTGGATTCTTCATAGAAGTCAATTGAAGTCAAGATTGGGTGGCTCAAACCCTAACCCAGACCTCTTCCCTCTCGAACGGTACAAGTGGCTTGTAGAGTTTTCAATAGACCGTGATTGGCCTGCCGTTTTGAAGAAGCTTTTGGATATTCTTCTTGACGGGACTGTAAGTATAGGATATAGCCCTTCCTTGAATCTTGCATTATTGGAGCTGGGCCTTCTTCACCGGGCTGTGAGGAGAAATAGCCGCCCTCTGGTTGAGTTCCTGTTGAGATACACGTCCAAGGAAGAGAGTGTGTCGGGTGATGAGGAGGCTGGTGTTGACTTCTTATTTAGCCCTGATCATGTGGGCCCTGGGTCTCTGACTCCACTTCATATTGCAGCTGGGAAAGATGGTTCCGAAGATGTGATTGATGCCTTGACTGATGATCCCAGGATGGTTGGAATCAAAGCATGGAAGAATTCTCGAGACAGCACGGGATTCACCCCAGAGGATTACGCCCGTCTTCGTGGCCACTACTCTTACATTCACCTTGTGCAAAAGAAAATCAACAAGAGAACAACACCACCGCCTGAACATATTGTCCTCAACATCCCTAGTACCCTTTCAGACACTAGTAGCTCCAACAAAAAACAAAACAAAGAGATGGCTACGGGCTTAGAGATCGAGGCCCGAAGAGCGATTCGACAGGCCTGCAGGCTCTGTGATCAGAAACCGGCCAGCAGAATCTCGAGGAAGGCTTTCATTTACAGGCCCGCAATGCTATCAATGGTAGCCATAGCAACGGTTTGTGTTTGCGTGGCTCTGCTGTTCAAGAGTTCACCCGAGGTGTTCTATGTGTTCCGTCCGTTCAGGTGGGAAGCGTTGCGTTACGGAACAATCTGA 3081 44.4 METRFGGEAAPPHHHQLYNMNSVDLRAVGKRTLEWDLNDWKWDGDLFIATPLNPVPPHPHFPSGSEIPAPIGGGGGSSNSSSSCSEELNLGSEKEKKESMEKKKRRVVVVKDYSSNDEAATLGLNLGRNGFQVGDREAVGNWEEMSGKKTKLVAGNSSRSICQVEDCGADLSGAKDYHRRHKVCEMHSKASRALVGNVLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPETAVNTSSSVDNQNSGYLIISLLRILSNMHSQKSDQAVDQDLLSHLLRSLASSQTNEDGRENLSSLLEKSQNFRNNGRLIGSSELVSTFPSNCPQAPPRPSKPHNRLTLLETPQQGKHAHNNAQEEDAQITLSSVKPSIVNNPPAYSEVRDSAVGISKVNKFDLNDIFIDSDDGMEDMERSHAPTNLGMGSLGRPSWIQIDSHQSSPPRPSGNSDSPCTQSPSSSNGEAQSRTDRIVFKLFGKEPSDFPMVLRTQILDWLSHSPTDIESYIRPGCVILTIYLRQTAIAWDELCYDLRSSLNKLLQASDDDDTFWRTGWVYVRIQNQIAFIHHGQIVLDRSLSLKPNHHSKIISLKPIAITASDKARISVRGSNLFGPATRLLCALGGKYLIQKDVDESMINFESSEKEDDLQCISFSCSVPIVNGRGFIEVEDHGLSSSFFPFIVAEEDVCSEIRILETALGFTEMYSESSDSVEEGRKMAEVRSQAIDFINEMGWILHRSQLKSRLGGSNPNPDLFPLERYKWLVEFSIDRDWPAVLKKLLDILLDGTVSIGYSPSLNLALLELGLLHRAVRRNSRPLVEFLLRYTSKEESVSGDEEAGVDFLFSPDHVGPGSLTPLHIAAGKDGSEDVIDALTDDPRMVGIKAWKNSRDSTGFTPEDYARLRGHYSYIHLVQKKINKRTTPPPEHIVLNIPSTLSDTSSSNKKQNKEMATGLEIEARRAIRQACRLCDQKPASRISRKAFIYRPAMLSMVAIATVCVCVALLFKSSPEVFYVFRPFRWEALRYGTI 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1823945 1829971 + Conep17aG0039400.1 Cone17ag0385 455862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0385 1026 Pfam SBP domain 162 235 IPR004333 GO:0003677(InterPro)
Cone17ag0385 1026 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 1023 IPR044817 GO:0003677(InterPro)
Cone17ag0385 1026 Gene3D - 153 223 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone17ag0385 1026 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677(InterPro)
Cone17ag0385 1026 MobiDBLite consensus disorder prediction 435 468 - -
Cone17ag0385 1026 MobiDBLite consensus disorder prediction 226 248 - -
Cone17ag0385 1026 SUPERFAMILY Ankyrin repeat 805 910 IPR036770 -
Cone17ag0385 1026 MobiDBLite consensus disorder prediction 74 88 - -
Cone17ag0385 1026 Gene3D - 794 925 IPR036770 -
Cone17ag0385 1026 MobiDBLite consensus disorder prediction 58 102 - -
Cone17ag0385 1026 SUPERFAMILY SBT domain 161 241 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone17ag0385 1026 MobiDBLite consensus disorder prediction 413 468 - -
Cone17ag0385 1026 FunFam Squamosa promoter-binding-like protein 14 153 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0513 Cone-Chr14:2555290 Cone17ag0385 Cone-Chr17:1823945 1.72E-32 dispersed
Cone15ag0539 Cone-Chr15:2661415 Cone17ag0385 Cone-Chr17:1823945 7.34E-32 dispersed
Cone17ag0385 Cone-Chr17:1823945 Cone18ag0772 Cone-Chr18:4379669 0 dispersed
Cone11ag0721 Cone-Chr11:4985716 Cone17ag0385 Cone-Chr17:1823945 0 wgd
Cone17ag0385 Cone-Chr17:1823945 Cone20ag1033 Cone-Chr20:7194361 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45025 PF14369 zinc_ribbon_9 4.00E-08 CL0167 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0385 - - - 0.0