Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0409 ATGATGTCGGTGCCGTTCATGATGTCGGTGCCAGCAGCTTTCATCAAAACCAGTACACTGAAAAACGGCCATTGCTTTTTCCTGAAGAAATTGGTTTTATTCTGTTTTGTGCTATCAATCGCTAGTGCTGATCTACCTATATCTCCTAGTGGAGCTCAATTGGCTGCACCTGCCATTCCTCATCTACCTCTGCCTTCAAACCTGCCAGTACATCACAGGCAGTGGAGGAAACATTTTTCACCTCTTGGTGCTCTAATATCTAATCTTCCCTATTATGACCCTCTGCTAACTTCTGGTCATCCCTCTACTAGCTCACATTTTTCCGAACTATATGTGAAGAGGAATGGATTAGCACCACCAGTTTTAGGCTCTGAGAACATCGCCCCAATACAGTCTAGTGCTGGCTCTGTTCCTTCTAGTTCATCTCAGCCACCCTTATCTCCCTACTCATCCGATTGTTGCACTCATGACATGGTACTGAAACGGGGGACTCAGGGCTGCCATTGTGTGTACCCTATAAAGCTTGATCTTCTCCTTTTAAATGTTTCACAAAATCCAAATTGGAATCTGTTTATGGAAGAATTAGCTTCCCAGCTTCATTTGCAAGATTCTCAGATTGAGCTGATAAACTTTTATGTAATCAGCTTGTCGAAATTAAATATCTCAATGGATGTTACTCCACTTACGGGGATCAGTTTCTCTGCCGGTGAGGCATCGGCAATAAACTCTTCACTTGCCATGCATAAGGTTCGTCTAAACCCTACGCTCGTGGGTGATTATAAACTTCTCAACTTAACCTGGTTTAAGCCGCCACCTAATTCTCAAGCTCCTCTCAGTGCCGCATCGCCTGTGCCCGTCCCAAGGCACAAGTCCCCAGTTTCCACATCTCCTAGTCCTTCAGATAATAAGAAACATACAAATGTGATGCTTTTTATTGGTATTGGAGCAGGCTTGCTACTTGTTGCCGTACTGTTCCTGCTAATACTTTATTTCTGCACATATTGTCAAAGGAAAAATAAGGCATCTACAGTAATAACTGAAAAAGTGATAGGTGCGAATGCGGTTCCAGTAGTAGGATCTCTTACCCACCCAACCAGCACAAGGTTTCTAGCTTATGAAGAACTCAAAGAAGCAACCAACAACTTCGAACCTGCAAGCATACTTGGAGAAGGTGGTTTCGGTAGAGTTTTCAAAGGCGTATTGAGTGATGGTACACCTGTAGCAATCAAGAGACTTTCTAATGGAGGGCAACAAGGAGATAAAGAATTTCTTGTCGAGGTTGAAATGCTTAGCAGGTTGCATCATCGTAATCTTGTGAAACTTGTTGGTTACTATAGCTGCCGAGATTCTTCACAAAACCTACTCTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAGGCTTGGCTCCATGGACCCCTTGGTTTAAACTGTCCTTTGGACTGGGAAACCAGAATGAAGATTGCCCTTGATGCTGGCCGAGGACTTGCTTACCTACATGAAGATTCACAACCCTGTGTTATTCACAGAGACTTCAAGGCATCAAATATATTGCTGGAGAAAAACTTCACCGCCAAAGTTTCTGATTTTGGCCTCGCTAAACTGGCTCCTGAAGGCAGAGCAAATCACCTGTCTACTCGTGTAATGGGGACATTTGGGTATGTAGCTCCCGAGTATGCAATGACTGGACATCTACTAGTTAAAAGTGATGTTTATAGTTACGGAGTTGTCCTCCTTGAACTGCTGACGGGAAGGAGGCCTGTTGATATGTCACAACCAGCTGGGCAGGAAAACCTCGTCAGTTGGGCAAGGCCGATTCTTCGAGACAAGGATAGGCCGGAAGAACTTGCTGATCCAAGGCTAGGAGGAAAGTACCCAAAGGAAGATTATCTTCGGGTGTGTACAATAGCTGCAGCTTGTGTTTCTCCCGAGGTAAATCAACGGCCCACAATGGGAGAAGTAGTGCAGTCCCTTAAAATGGTACAAAGAGTCACGGAGTATCAAGAACCTGCTTTACCATCCTCCAACAACACAAGACCAAACCTCAGACAGTCTTCAACTACATTCGAGTCGGATGGAACATCATCAATTTTCTCATCTGGTCCTTATTCCGGTCCTAGTAATTTTGGCAATGAGAATTTCTCTAGGACTGGAATTTTCTCTGAAGATCTTCATGAAGGGCGATGA 2184 44.28 MMSVPFMMSVPAAFIKTSTLKNGHCFFLKKLVLFCFVLSIASADLPISPSGAQLAAPAIPHLPLPSNLPVHHRQWRKHFSPLGALISNLPYYDPLLTSGHPSTSSHFSELYVKRNGLAPPVLGSENIAPIQSSAGSVPSSSSQPPLSPYSSDCCTHDMVLKRGTQGCHCVYPIKLDLLLLNVSQNPNWNLFMEELASQLHLQDSQIELINFYVISLSKLNISMDVTPLTGISFSAGEASAINSSLAMHKVRLNPTLVGDYKLLNLTWFKPPPNSQAPLSAASPVPVPRHKSPVSTSPSPSDNKKHTNVMLFIGIGAGLLLVAVLFLLILYFCTYCQRKNKASTVITEKVIGANAVPVVGSLTHPTSTRFLAYEELKEATNNFEPASILGEGGFGRVFKGVLSDGTPVAIKRLSNGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSCRDSSQNLLCYELVPNGSLEAWLHGPLGLNCPLDWETRMKIALDAGRGLAYLHEDSQPCVIHRDFKASNILLEKNFTAKVSDFGLAKLAPEGRANHLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRRPVDMSQPAGQENLVSWARPILRDKDRPEELADPRLGGKYPKEDYLRVCTIAAACVSPEVNQRPTMGEVVQSLKMVQRVTEYQEPALPSSNNTRPNLRQSSTTFESDGTSSIFSSGPYSGPSNFGNENFSRTGIFSEDLHEGR 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1940575 1945338 + Conep17aG0041800.1 Cone17ag0409 455886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0409 727 MobiDBLite consensus disorder prediction 276 302 - -
Cone17ag0409 727 Gene3D Transferase(Phosphotransferase) domain 1 460 677 - -
Cone17ag0409 727 PANTHER OS01G0750732 PROTEIN 153 694 IPR050885 -
Cone17ag0409 727 CDD STKc_IRAK 388 658 - -
Cone17ag0409 727 FunFam Receptor-like serine/threonine-protein kinase ALE2 362 459 - -
Cone17ag0409 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0409 727 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524(InterPro)
Cone17ag0409 727 SUPERFAMILY Protein kinase-like (PK-like) 358 659 IPR011009 -
Cone17ag0409 727 ProSiteProfiles Protein kinase domain profile. 382 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0409 727 Pfam Protein tyrosine and serine/threonine kinase 386 657 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0409 727 Gene3D Phosphorylase Kinase; domain 1 363 459 - -
Cone17ag0409 727 FunFam Receptor-like serine/threonine-protein kinase ALE2 460 675 - -
Cone17ag0409 727 MobiDBLite consensus disorder prediction 667 727 - -
Cone17ag0409 727 MobiDBLite consensus disorder prediction 667 717 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0409 Cone-Chr17:1940575 Cone18ag0817 Cone-Chr18:5195317 2.47E-119 dispersed
Cone11ag0700 Cone-Chr11:4775332 Cone17ag0409 Cone-Chr17:1940575 0 wgd
Cone17ag0409 Cone-Chr17:1940575 Cone18ag0752 Cone-Chr18:4146543 0 wgd
Cone17ag0409 Cone-Chr17:1940575 Cone20ag1003 Cone-Chr20:7052299 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82258 PF10250 O-FucT 2.70E-55 CL0113 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0409 - - - 0.0