Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0442 ATGGCGTCGAGGAATCGAACCGCTCTGTACAAGAAGCACAGAGATGCCGCGAAGAGTGTCCGGGCGCCGCTATCTTCCTCTGCGTCCAGTTCGAGCGGTCCGGTGATTGAGATGGTGAACGCTTCTTTTCTTCGTTCCAAACGCTCTTCTTATGCGCCTCTCAGCACAGAAGATTCAGGTCCTTCCAGTGGTGATGCTTATACGGTGGGTTTACCTCCTGCTTGGGTGGATGATTCTGAAGAAATAGGTAATAACATACAACGTGCGCGAGTTAAGATGGCTGAATTAGTGAAGGCTCATGCCAAAGCTCTAATGCCTTCATTTGGAGATGGAAAAGAAGATCAACGCATGATTGAGGCCCTTACCCAAGAGATTACAGGTCTGTTGAGAAAGTCCGAGAAGAGATTAAAGAAACTTTCTGCGAGTGACTCCTCTGAAGATTCTAACATTAGAAAAAATGTGCAGCATTCTCTTGCAACAGACCTTCAGAACCTGTCAATGGAACTCCGTAGAAAACAGTCAATGTATCTGAAGCATCTGCAGCAGCAAACGGAGGGACGTGATGGGATTGATTTGGAGATGAATTTTAACGGAAACAAAACTAGACTGGATGATGATGAATTTAGTGATGTGGGTTTTGATGAGCACCAGATGATGAGGCTAACTAAGAGTGAGCAGTTCTCAGAGGAAAGGGAGAGAGAGATAAAACAGGTAGTGGAGTCAGTAAATGAGCTCGCTCAAATTATGAAGGATCTCTCAGTCCTTGTTATAGACCAGGGCACTATAGTTGACCGGATTGACCACAATATCCAGAACGTTGCTGCAACTGTTGACGATGGTTTAAAACAGCTCCAAAAGGCAGAGAAAACCCAAAAAGGAGGAGGAATGGTGAAGTGTGCGACAGTGCTCGTCATCATGTGCTCAGTCATGCTTGTTCTCTTGATTCTTAAGGAGATATTTTTGTGA 966 45.13 MASRNRTALYKKHRDAAKSVRAPLSSSASSSSGPVIEMVNASFLRSKRSSYAPLSTEDSGPSSGDAYTVGLPPAWVDDSEEIGNNIQRARVKMAELVKAHAKALMPSFGDGKEDQRMIEALTQEITGLLRKSEKRLKKLSASDSSEDSNIRKNVQHSLATDLQNLSMELRRKQSMYLKHLQQQTEGRDGIDLEMNFNGNKTRLDDDEFSDVGFDEHQMMRLTKSEQFSEEREREIKQVVESVNELAQIMKDLSVLVIDQGTIVDRIDHNIQNVAATVDDGLKQLQKAEKTQKGGGMVKCATVLVIMCSVMLVLLILKEIFL 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2078757 2081576 - Conep17aG0045100.1 Cone17ag0442 455919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0442 321 Pfam SNARE domain 261 313 IPR000727 -
Cone17ag0442 321 FunFam Syntaxin-43 72 279 - -
Cone17ag0442 321 PANTHER SYNTAXIN 82 306 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone17ag0442 321 MobiDBLite consensus disorder prediction 1 33 - -
Cone17ag0442 321 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 225 287 IPR000727 -
Cone17ag0442 321 CDD SNARE_syntaxin16 229 286 - -
Cone17ag0442 321 ProSitePatterns Syntaxin / epimorphin family signature. 231 270 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone17ag0442 321 Gene3D - 72 279 - -
Cone17ag0442 321 SMART tSNARE_6 220 287 IPR000727 -
Cone17ag0442 321 SMART SynN_4 66 181 IPR006011 GO:0016020(InterPro)
Cone17ag0442 321 SUPERFAMILY t-snare proteins 71 280 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0804 Cone-Chr10:4080924 Cone17ag0442 Cone-Chr17:2078757 3.28E-150 dispersed
Cone17ag0442 Cone-Chr17:2078757 Cone3ag0826 Cone-Chr3:4239376 1.81E-147 dispersed
Cone17ag0442 Cone-Chr17:2078757 Cone20ag0971 Cone-Chr20:6911166 3.84E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0442 K08489 - rcu:8265473 474.552