Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0452 ATGTACAACTTCAAAAAGAAAACAAAACTCCTAACTCCACCTCAAATAGCAGCAGCAGTACTAATTTCACTCTTTCTCTTCTTCACTGTAACAGCTTTTCTAACAAACTCGCCCTCAAAAACCACGCACATTCACCTCCACCTCCACAACCATCTCCAAATCGCACAGTCCACCTGCGCCGGCACGCTCTACCCCTCCCTCTGCGTCTCCACTATCGCCTCCTTCTCAGATCTCACATCCAAATCGCCTAAAGAAATTGCACACTCCGCCATAAACACCACCATTTCCGAAGTCGAGATCGCATCATACAACTGCTCAAAGATCAAGAGCAAGCTCCTCAGGCACCTCGACCTCATCGAGCAACGTGCCCTAGATGACTGCTTTGAACTGTTCGAAGACACCGTGGCGGAGCTGCGCACTGCTCTGTCAGATCTCTCGTCGAAGAAGAAATCGGTCGCTGATTCTTACGATGACTTGCAGACCTTGCTTAGTGGCGCAATGACGAACCAGTACACTTGCCTCGACGGATTCGCGTACAGTAAAAAGAAGGTGAGGCGTCGGATCGAGAAGTTTATGAACAGGATCTCGCATCATGTGAGTAATACTCTGGTTTTGCTGAAGAAGATTCCTGGAGTTAATGGAACTAAGTCGGCGGCGGCGGCGGGGACTCCAGAGTACTACGCCCCGGTGAAAGACGGATATCCGACTTGGATCTCGTCCAAGGATCGGAGACTTCTGCAGGCGCCTGTGAACCAGACTAAGTTCGATTTGGTGGTGGCTCAAGACGGCTCTGGAAATTTCTCCACCGTCACCGACGCCGTGAACGCCGCACCGAACTCCACCACAACCAGGTTTGTAATATATATAAAGGCGGGGGCATATTTCGAGAATGTGGAAGTGGTTAGCAAGAAAACGAATCTGATGTTCGTCGGAGACGGGATCGGAAAGACGGTGATAAAAGCAAGTCGGAATGTGGTTGATGGGTGGACTACTTTCCGGTCAGCCACCGTGGCTGTGGTGGGGAACGGATTCATAGCCAAAGGCATAACCGTAGAGAACGCCGCCGGTCCGAGCAAACACCAAGCCGTAGCCCTAAGAAGCGGGTCGGACCTATCAGCCTTCTACAACTGCAGTTTCGTAGGCTATCAAGACACCCTCTACGTCCACTCCCTCCGTCAATTTTACCGCGAATGCGATATTTACGGCACCGTAGATTTCGTTTTCGGAAACGCCGCCGTAGTGTTTCAAAACTGCAACTTGTATGCTCGTAAACCAAACGACAATCAGAAAAACATCTTCACAGCACAAGGCAGAGAGGACCCGAACCAGAACACCGGAATTTCACTCCTCAACTGCAAAATGGCGGCAGCCGCCGACCTCATTCCGGTGAAGTCGTCCTTTAAAAACTACCTCGGCCGGCCATGGAAGGAGTACTCAAGGACAGTGGTTATGAAGTCTAACATCGAGGATTTGATTGATCCGGCTGGATGGCTCGAGTGGAACGGCACTTTTGCGTTGAGCACGTTGTATTATGGCGAGTACTTGAACCGCGGTTTGGGTTCGAATACAACGGGTAGAGTGACCTGGCCGGGTTATAGGGTTATCAATAGCTCGACTGAGGCCAGCCTGTTTATAGTTGACGCGTTTATTCAAGGAAATGAATGGTTGAATTCTACTGGTATTCCATATTCTCTGACGCTTTGA 1704 50.18 MYNFKKKTKLLTPPQIAAAVLISLFLFFTVTAFLTNSPSKTTHIHLHLHNHLQIAQSTCAGTLYPSLCVSTIASFSDLTSKSPKEIAHSAINTTISEVEIASYNCSKIKSKLLRHLDLIEQRALDDCFELFEDTVAELRTALSDLSSKKKSVADSYDDLQTLLSGAMTNQYTCLDGFAYSKKKVRRRIEKFMNRISHHVSNTLVLLKKIPGVNGTKSAAAAGTPEYYAPVKDGYPTWISSKDRRLLQAPVNQTKFDLVVAQDGSGNFSTVTDAVNAAPNSTTTRFVIYIKAGAYFENVEVVSKKTNLMFVGDGIGKTVIKASRNVVDGWTTFRSATVAVVGNGFIAKGITVENAAGPSKHQAVALRSGSDLSAFYNCSFVGYQDTLYVHSLRQFYRECDIYGTVDFVFGNAAVVFQNCNLYARKPNDNQKNIFTAQGREDPNQNTGISLLNCKMAAAADLIPVKSSFKNYLGRPWKEYSRTVVMKSNIEDLIDPAGWLEWNGTFALSTLYYGEYLNRGLGSNTTGRVTWPGYRVINSSTEASLFIVDAFIQGNEWLNSTGIPYSLTL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2131807 2135110 - Conep17aG0046100.1 Cone17ag0452 455929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0452 567 CDD PMEI-like_3 57 211 - -
Cone17ag0452 567 Pfam Plant invertase/pectin methylesterase inhibitor 55 205 IPR006501 GO:0004857(InterPro)
Cone17ag0452 567 NCBIfam pectinesterase inhibitor domain 20 208 IPR006501 GO:0004857(InterPro)
Cone17ag0452 567 Pfam Pectinesterase 256 553 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone17ag0452 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 210 IPR035513 -
Cone17ag0452 567 Gene3D - 250 567 IPR012334 -
Cone17ag0452 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 211 IPR035513 -
Cone17ag0452 567 FunFam Pectinesterase 51 210 - -
Cone17ag0452 567 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Cone17ag0452 567 PANTHER PECTINESTERASE 19 558 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone17ag0452 567 SUPERFAMILY Pectin lyase-like 253 566 IPR011050 -
Cone17ag0452 567 SMART PMEI_2 50 205 IPR006501 GO:0004857(InterPro)
Cone17ag0452 567 FunFam Pectinesterase 250 567 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0452 Cone-Chr17:2131807 Cone20ag0960 Cone-Chr20:6865051 0 dispersed
Cone17ag0452 Cone-Chr17:2131807 Cone17ag0453 Cone-Chr17:2145975 8.64E-132 tandem
Cone14ag0748 Cone-Chr14:4183617 Cone17ag0452 Cone-Chr17:2131807 5.65E-116 wgd
Cone15ag0754 Cone-Chr15:4429604 Cone17ag0452 Cone-Chr17:2131807 2.23E-123 wgd
Cone17ag0452 Cone-Chr17:2131807 Cone20ag0959 Cone-Chr20:6855559 3.97E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0452 K01051 - gmx:100802881 776.163