Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0453 ATGGCTTCTAAAATCTCAACCCTTCACCTTGAAACTTCATTTTCCATTCTTCTACTTCTTCTTCTTTTTCTTCCATCACTTCTCAGCTCCTTATCAAATGCAGACACCCCTTCACCAGCATCAAGTCCGGTATCCGCTGGGTCCATCTGCAAGTCCACCCCGGACCCTACTTATTGCAAATCTGTGCTACCAAGCCAGTCTGGCAATGTCTACTACTACGGCCGGTTTTCTGTCCGTAAGGCATTGTCCCAATCAAGTAAATTTCTGAGTACCATTGAGAAATATCTCAATCGCCGGTCGACTTTGACACAGAGTGCAATTCGGGCCCTAGAGGATTGTCGATTACTTGCCGGACTAAACATTGATTTCTTGCAGAGCTCGTTTGTAATCCTAAGTGCCGTAAACACGACTCTTCCCACCATGAAAGCCGATGACGTCCAAACGGAACTTAGTGCCATATTGACCAACCAACAAACATGTCTAGATGGCTTACAAGCTACATCTTCAGCTTGGAGTGTAAGAAATGGTCTCTCAACCCCACTTGCTAATGACACAAAGCTTTATAGCATGTCCTTAGCTTTGTTCACCAAAGGTTGGGTCCCAAAGAAGAAGAGATCAAAGACTTTAACATGGCAACCTAGTACGAAACAACTCGGGTTCAAAAACGGACATTTGCCACTTAAGATGTCCGGCCAAACCAGGGCAATTTATGAGAAGGTGAGTCGAAGAAAGGTTTTGGAAACGGCAGGGAACGGTAATGATCAGGTCGTGGTGAGTAATATCGCGGTGGTGAGTCAAGATGGAAGCGGAAATTTTACGACAATAACCGATGCTATTAGTGCGGCTCCAAATAACACTGTATCTACAAATGGGTATTTCTTGATCTACGTTACAGCTGGTATTTATGAAGAATATGTATCCATTACGAAGAACAAGAGGTATTTGATGATGATTGGGGATGGAATTAAACAAACGATTATTACTGGTAATAGAAGTGTTGTAGATGGGTGGACAACTTTCAACTCTGCATCATTTGCCGTAGTCGGACTGGGCTTTGTAGGAGTGAACATGACGATACGCAACACGGCAGGAGCGATAAAGCACCAAGCAGTAGCCCTTAGAAACAGTGCCGATCTCTCCACCTTCTACTCTTGTAGCATTGAAGGCTACCAAGATACATTGTACACACATTCTCTACGTCAATTCTACCGAGAATGCGATGTCTATGGCACTGTCGATTTCATCTTTGGTAATGCTGCCGCTGTACTCCAAAACTGCAATCTGTACCCTCGACTTCCGATGGCGAATCAATTCAACGCCATCACAGCACAAGGTCGAACGGATCCAAATCAGAACACAGGGACTTCAATCCACAATTGTACAATTAAAGCCGCAGACGAATTAGCGACAAGTAACACGACTTTTCAGACTTATTTAGGCCGACCTTGGAAGGAGTACTCGAGGACAGTATTTATGCAGAATTACATGGATAGTTTGATCAATCCTCAAGGATTGCGGGCTTGGGATGGAGATTTTGCATTGGATACTTTGTACTATGCGGAGTATAACAATTCCGGACCGGGATCGAACACGAGCCAAAGAGTGAATTGGAGTGGTTATCATGTGATTAGTAGCAATGATGCAGCGAGTTTCACTGTGGGGAGCTTCATCCTGGGAGATGACTGGTTGCCACAGACAGGAGTGCCTTATACAACCGGGTTGATTAGCTACAATGGGGCTTTGGAGGAAGGTCTCAAAGATCATTTCAAACACATGGAGGTCTTTGATGCTGCCAACGGAAACCGACTAGAGAGTCCTCCTGGTCGTGTTGCTTCTCGGGACATTGTACAGTTTGCAAGGTACGTAGCTCAATCCGTAGTTTAA 1884 44.75 MASKISTLHLETSFSILLLLLLFLPSLLSSLSNADTPSPASSPVSAGSICKSTPDPTYCKSVLPSQSGNVYYYGRFSVRKALSQSSKFLSTIEKYLNRRSTLTQSAIRALEDCRLLAGLNIDFLQSSFVILSAVNTTLPTMKADDVQTELSAILTNQQTCLDGLQATSSAWSVRNGLSTPLANDTKLYSMSLALFTKGWVPKKKRSKTLTWQPSTKQLGFKNGHLPLKMSGQTRAIYEKVSRRKVLETAGNGNDQVVVSNIAVVSQDGSGNFTTITDAISAAPNNTVSTNGYFLIYVTAGIYEEYVSITKNKRYLMMIGDGIKQTIITGNRSVVDGWTTFNSASFAVVGLGFVGVNMTIRNTAGAIKHQAVALRNSADLSTFYSCSIEGYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAAVLQNCNLYPRLPMANQFNAITAQGRTDPNQNTGTSIHNCTIKAADELATSNTTFQTYLGRPWKEYSRTVFMQNYMDSLINPQGLRAWDGDFALDTLYYAEYNNSGPGSNTSQRVNWSGYHVISSNDAASFTVGSFILGDDWLPQTGVPYTTGLISYNGALEEGLKDHFKHMEVFDAANGNRLESPPGRVASRDIVQFARYVAQSVV 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2145975 2148507 + Conep17aG0046200.1 Cone17ag0453 455930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0453 627 CDD PMEI-like_3 48 199 - -
Cone17ag0453 627 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Cone17ag0453 627 NCBIfam pectinesterase inhibitor domain 17 195 IPR006501 GO:0004857(InterPro)
Cone17ag0453 627 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 197 IPR035513 -
Cone17ag0453 627 Gene3D - 256 574 IPR012334 -
Cone17ag0453 627 SMART PMEI_2 39 194 IPR006501 GO:0004857(InterPro)
Cone17ag0453 627 FunFam Pectinesterase 255 574 - -
Cone17ag0453 627 SUPERFAMILY Pectin lyase-like 257 573 IPR011050 -
Cone17ag0453 627 PANTHER PECTINESTERASE 14 565 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone17ag0453 627 FunFam Pectinesterase 47 197 - -
Cone17ag0453 627 Pfam Pectinesterase 262 560 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone17ag0453 627 Pfam Plant invertase/pectin methylesterase inhibitor 48 194 IPR006501 GO:0004857(InterPro)
Cone17ag0453 627 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 197 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0453 Cone-Chr17:2145975 Cone20ag0959 Cone-Chr20:6855559 0 dispersed
Cone17ag0452 Cone-Chr17:2131807 Cone17ag0453 Cone-Chr17:2145975 8.64E-132 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0453 K01051 - mdm:103449172 844.343