Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0465 ATGGAAAAAACGGTTTCCTGGAAGCTCCACCTGTCGTCCTGTCCCATCATCTTCTCCATTTTAGTTCAAAGTGGGAGCTGCTCGCTCAACAAAGCTCCTCCGACCTCCTCCATCAGAAAGCTAGCCTCTAACCCTAACCCTAATTCCCAATTTCCATTCCAGATGTCGTCTCTCTTCTTTCTCCTCACTCTATCTTCAATCCTCTTCCCCACCCTAACTCTCTCCCAAAACGACACCGTCCCCTGCCCCCTCAACTTCACCATCCTCCAACAGTTTACTCGAAACTCTTCCCCTCCCAACCTCGACCTCGCGAACCAATGCCAGTACGTCCGGCAAGGCCTCCGCCTCCTCGAATCGGATTACCTCAAGCTCACCGGATTCTTCCTACCGCCACTCAACTCCTCCGATTCCTGCTGGATTGCTTACCAATCGCTCGTCGTCAACTATACCGGATCCAGCTTTGATATCAGATCCTCTTGTGGATTCCAAACCAGCTGGATCTCACAAGGATGCATCAATATCACCTCCAGAATCGAGTTCGAGAATCAAGTTCCGAAATCAGCCATCGACAACGTCGTCGCGAACTGTAATCAATCGCTCGAGAACAGTTCTCCCTGTGCTTCTTGTACTACCAGCTTTTCGATTCTGCAGGCTTCTTATCTTACCGGATCTTCAATCGGTAATGTTTCTGATTGCTCTTCTCTTGCCGCGATTTATGCTGCTGCTTTTGCTAATCAGTTAGGGCCCACCGATCCCGGCACTGCTAAGTGCTTATTCTCACTCGGTCCTTTTATATCATCTGGAAAAGGAAATAAGCAGAACTGGAAGGTCATTCTAGGAGTCTTGATTGGGTGTGGGATTGGAGTAGGACTGATTATTGCAGGGGGGTGGTATTATTTCCGGAGATTTAACAAATCAGGAAAGAGAACGAAGTGGAAGGGAGGCATTAGGAAGGATCAGATTGATCGAGTAGAGACTGGTTTAGGTTCAAAGTTAGATTCAATTACGGAAAGTACTACTTTAGTGAGGTTCACATTTGAAGAGATTAAGAAAGCAACTAAGAATTTCTCTAGGGTGAATATGATTGGGCGAGGAGGGTATGGAAACGTGTATATAGGCGTTCTTCTAGACGGGACAGAAGTTGCACTGAAGAGGTTCAAGAATTGCTCAGCTTTGGGAGACGCAAATTTTGCACATGAAGTGGAAGTAATTGCTAGCGTGAGGCATGTGAATCTCGTCGCCTTAAGAGGTTATTGTATAGCAACTACTCCATTAGAAGGTCACCAAAGAATAATTGTATGTGATTTGATGAAGAATGGAAGTCTTCATGATCATTTGTTTGGGTCTTTTGATAAGAAGCTCAGTTGGCCGATTAGGCAAAACATTGCTCTAGGAACGGCAAGAGGATTGGCTTATTTGCATTATGGAGCTCAACCCGGTATAATCCATAGGGATATTAAAGCAAGTAATATACTTTTAGATGAGAAATTTGAGGCTAAGGTTGCTGATTTTGGGCTGGCTAAGTTTACGCCAGAAGGAATGACTCATATGAGCACACGAGTGGCCGGAACTATGGGTTATGTTGCACCGGAATATGCTTTATACGGGCAGTTATCGGAAAGAAGTGATGTGTATAGCTTTGGTGTTGTTCTGCTTGAGCTTTTGAGTGGGAAGAAAGCACTTGTTGTGAATAATGAAGACCAACCTTATTTAGTGACTGATTGGGCGTGGGCTTTGGTGAAGAAGGGAAGGGCTTTGGATGTTATTGATGAGGGTATTCCGGAACTAGGTGGGCCTGAGGTTCTTGAGAAGTATGTGCTAGTTGCGGTGCTTTGTTCTCATCCACAGTTGTATGCTAGGCCTACTATGGATCAGGTAGTAAAAATGTTGGAAACGGATTTATCGGTTCCCACGATTCCAGAAAGGCCGATCCCTCTTGTCGCTGAGATTGATGAGATTGAGAGGTCGATGAGTAGTAGTGGTGGTGGGTCCAGTCACTTGTCTACCCCGACTGGGTTTCAACCGTTTACTACGGAGAGGGACTGTCTTTCCGTCCATGAGGAAGAAAGGTGA 2073 45.78 MEKTVSWKLHLSSCPIIFSILVQSGSCSLNKAPPTSSIRKLASNPNPNSQFPFQMSSLFFLLTLSSILFPTLTLSQNDTVPCPLNFTILQQFTRNSSPPNLDLANQCQYVRQGLRLLESDYLKLTGFFLPPLNSSDSCWIAYQSLVVNYTGSSFDIRSSCGFQTSWISQGCINITSRIEFENQVPKSAIDNVVANCNQSLENSSPCASCTTSFSILQASYLTGSSIGNVSDCSSLAAIYAAAFANQLGPTDPGTAKCLFSLGPFISSGKGNKQNWKVILGVLIGCGIGVGLIIAGGWYYFRRFNKSGKRTKWKGGIRKDQIDRVETGLGSKLDSITESTTLVRFTFEEIKKATKNFSRVNMIGRGGYGNVYIGVLLDGTEVALKRFKNCSALGDANFAHEVEVIASVRHVNLVALRGYCIATTPLEGHQRIIVCDLMKNGSLHDHLFGSFDKKLSWPIRQNIALGTARGLAYLHYGAQPGIIHRDIKASNILLDEKFEAKVADFGLAKFTPEGMTHMSTRVAGTMGYVAPEYALYGQLSERSDVYSFGVVLLELLSGKKALVVNNEDQPYLVTDWAWALVKKGRALDVIDEGIPELGGPEVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDLSVPTIPERPIPLVAEIDEIERSMSSSGGGSSHLSTPTGFQPFTTERDCLSVHEEER 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2222402 2224559 - Conep17aG0047600.1 Cone17ag0465 455942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0465 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0465 690 Pfam Protein kinase domain 358 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0465 690 Pfam SPARK 77 232 IPR043891 -
Cone17ag0465 690 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524(InterPro)
Cone17ag0465 690 MobiDBLite consensus disorder prediction 657 678 - -
Cone17ag0465 690 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 317 435 - -
Cone17ag0465 690 SUPERFAMILY Protein kinase-like (PK-like) 333 631 IPR011009 -
Cone17ag0465 690 CDD STKc_IRAK 362 631 - -
Cone17ag0465 690 Gene3D Transferase(Phosphotransferase) domain 1 437 636 - -
Cone17ag0465 690 PANTHER OS01G0750732 PROTEIN 93 655 IPR050885 -
Cone17ag0465 690 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 437 638 - -
Cone17ag0465 690 MobiDBLite consensus disorder prediction 656 690 - -
Cone17ag0465 690 Gene3D Phosphorylase Kinase; domain 1 322 435 - -
Cone17ag0465 690 SMART serkin_6 356 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0465 690 ProSiteProfiles Protein kinase domain profile. 356 639 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0465 Cone-Chr17:2222402 Cone4ag1426 Cone-Chr4:11369690 2.93E-118 dispersed
Cone11ag0886 Cone-Chr11:7301570 Cone17ag0465 Cone-Chr17:2222402 2.16E-260 wgd
Cone17ag0465 Cone-Chr17:2222402 Cone20ag0888 Cone-Chr20:6476040 2.88E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82259 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0465 - - - 0.0