Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0478 ATGAAGAAAACGATTTGGCTTTGCCGAAAACGAATTGACTTCTTCGAACAAATCAAAAAAGTTCACAGTTACGGTTTTAAAAAAAAGGGCATAATGCGTAGACTCCAAAACAAGGCACCTGTCTTCCTGGTCCTACAGGCACAACCATTACCGATAAAATGGACGGCTCTGATGCTAGGCGATAACTTCGGGCCTTCCTCTCGCAAACCGTATGGTGTAACAACCCATCAGCCGAGAAAACGGTGGAAATTTGATGGAAAACTAGAGGATTTGCAAATTAAACTTATTTGGGATGAAAACTTTGGCCTCTTTCACAATGGTCTTTGCACTGGAATTATCATTCTAGTAACCTCTGGAGGAAAAAGTTCTCACATTTTGGTCTTTGATGAACAACTTTTCTTTATCTATCTTCTGCCACCTATTATATTTAATGCTGGTAGTTTGATGTTATTTGCTGTCATATCACTAGGTGCATTTCAGCTTTTGAAGAACTTGGATATAGGCACCTTGGAGACAGCTGATTATTTTGCCCTTGGGGCAATATTTACAGCTACTGACTCTGTTTGCACCTTGCAAGTTCTTAATCAGGATGAGACACCTTTACTATACAGTTTAGTCCTTGGTAAAGGAGTAGTGAATGATGCCACAACTATAGTTCTTTTCAATGCAATTAAGAGATATGACATCTTCCACTTGACTCCAGCCAATTTGATGCAGTTTTTTGGAAATTTCTCTTATATGTTCTTGATAAGCACATTGTTGGGAGTAGGAGTAGGATTGGCCACTGCAGTACTCATTAAGGAGCTTTATCATGGCAGGGAATCTACTGATGGTGAAGTGGCTCTGATGATCTTAATGGCGTACCTTTCATATATGATAGCTGAATTGTGCGGTCTAACTGGCATTCTCGCTGTCTTCTTTTGTGGGATTGTCATGTCTCATTATGCCTGGCATATTGTGACTGATGAATCAAGAGTTATGACAAAACATGATTTTGCAACATTTATCATTCATTTCAGAGATTTTCAGCTTCCTGTATGTTGTCCTGGGACATCTTTTGCAGTGAGCTCGATTCTGTTTGTTCTGGTTCTACTTGGAAGAGCTGTTTTCGTGTTTCCCCTTTCTTTTCTATCCAACTTGGCTAGGAAGACTGAAAAAATTGGATTTAAACAGCAGTCTTTCAAGTGCTTAATTGATAAGTGA 1203 39.24 MKKTIWLCRKRIDFFEQIKKVHSYGFKKKGIMRRLQNKAPVFLVLQAQPLPIKWTALMLGDNFGPSSRKPYGVTTHQPRKRWKFDGKLEDLQIKLIWDENFGLFHNGLCTGIIILVTSGGKSSHILVFDEQLFFIYLLPPIIFNAGSLMLFAVISLGAFQLLKNLDIGTLETADYFALGAIFTATDSVCTLQVLNQDETPLLYSLVLGKGVVNDATTIVLFNAIKRYDIFHLTPANLMQFFGNFSYMFLISTLLGVGVGLATAVLIKELYHGRESTDGEVALMILMAYLSYMIAELCGLTGILAVFFCGIVMSHYAWHIVTDESRVMTKHDFATFIIHFRDFQLPVCCPGTSFAVSSILFVLVLLGRAVFVFPLSFLSNLARKTEKIGFKQQSFKCLIDK 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2302988 2306939 - Conep17aG0049100.1 Cone17ag0478 455955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0478 400 Gene3D - 171 223 - -
Cone17ag0478 400 PANTHER SODIUM/HYDROGEN EXCHANGER 102 393 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Cone17ag0478 400 Pfam Sodium/hydrogen exchanger family 146 384 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0478 Cone-Chr17:2302988 Cone1ag1776 Cone-Chr1:58371527 1.88E-113 dispersed
Cone17ag0478 Cone-Chr17:2302988 Cone20ag0909 Cone-Chr20:6560461 1.43E-155 wgd
Cone17ag0478 Cone-Chr17:2302988 Cone4ag0176 Cone-Chr4:826177 3.21E-103 wgd
Cone17ag0478 Cone-Chr17:2302988 Cone7ag0181 Cone-Chr7:761678 3.23E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0478 - - - 0.0