Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0479 ATGTCTCTTAAGAGTATCATTGAGGAAATGAAGGGTGAAATTGGTAGCATTTCAAGGAAAAGATTTGGGATGAGGTCGAGGTCGCACCGTGTTGTGCAAGATACCTCAGTTTCGGTTTCGGTTTTGGTCGATGCATTAAAGCAGAGCTGTTGGGCTAATATGCCCCTTGAGCTTTTGAGGGATGTTCTTATGAGGATAGAGGCTTCTAATGATACTTGGCCTTCTCGGAAAAATGTTGTTTCTTGTGCTGGGGTTTGCCGGAATTGGAGAGAAATAGTCAGAGAAATTGTTCAGTCCCCACAGTTTTCCGGAAAGTTGACTTTCCCAATCTCCTTGAAGCAGCCTGGTCCGAGGAACTCACTTCTCAAATGTTATATAAAACGGAATCGTAGCAATCAAACATATTATCTTTACCTCAGTTTACATCAAGCTTCGACTGATGATGGGAAGTTCCTTCTTGCTGCAAGTAAGTGTAGACGCCCAACTTGCACTGATTACATAATCTCTTTGAATTATGATGATGTGGCAAAAGGGAGCAGCACTTATGTTGGAAAGTTGAGATCAAATTTTCTGGGGACCAAATTCATGGTCTATGATGTACAACCTCCAACGCCAAGTACTGAAATCAAAGTCGGCAAGTGTCACTCTACTTCTACCAGGCTGGTAAACTCGAAACAGACGTCATCCAAAGCCCCTCCTGGAAATTATCTGGTCGCTCACATATCATATGATCTGAATGTCTTGGGTTCGAGGGGTCCTAGGAGAATGAAGTGTCTTATGGATGCCATCCCTTCTTCCTCTCTCGATCCAGGTGGTTCAGCTCCGACACAAACTGAATTCCTACTCACCAATCTGGATAGAATTCCATCCCTCCCTCTTTTCCGATCAAAATCAACCCGGATAGAGAATTCCCACTTTGGAATTGCAATGGGCCAAAATGAGTGCCCATTAGTGCTGGAGAATAAGGCCCCAAGCTGGCATGAACAACTCCAATGCTGGTGCTTGAACTTCAATGGACGAGTAACACTCCCTTCTGTAAAGAACTTCCAGCTTGTTGCTGCTCAGGAAAATGGGGCAGCTGGGCAGCCGAACAATGAGAATGTAATCCTCCAGTTTGGAAAAGTTGACAAGGATGTTTTCACCATGGATTATCAGTATCCAATCTCAGCTTTCCAAGCCTTTGCCATTTGCCTGAGTAGCTTTGACACAAAAATCGCTTGTGAATAA 1227 44.01 MSLKSIIEEMKGEIGSISRKRFGMRSRSHRVVQDTSVSVSVLVDALKQSCWANMPLELLRDVLMRIEASNDTWPSRKNVVSCAGVCRNWREIVREIVQSPQFSGKLTFPISLKQPGPRNSLLKCYIKRNRSNQTYYLYLSLHQASTDDGKFLLAASKCRRPTCTDYIISLNYDDVAKGSSTYVGKLRSNFLGTKFMVYDVQPPTPSTEIKVGKCHSTSTRLVNSKQTSSKAPPGNYLVAHISYDLNVLGSRGPRRMKCLMDAIPSSSLDPGGSAPTQTEFLLTNLDRIPSLPLFRSKSTRIENSHFGIAMGQNECPLVLENKAPSWHEQLQCWCLNFNGRVTLPSVKNFQLVAAQENGAAGQPNNENVILQFGKVDKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2307427 2310156 + Conep17aG0049200.1 Cone17ag0479 455956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0479 408 CDD F-box_AtTLP-like 51 95 - -
Cone17ag0479 408 Pfam Tub family 112 403 IPR000007 -
Cone17ag0479 408 ProSitePatterns Tub family signature 2. 393 408 IPR018066 -
Cone17ag0479 408 PANTHER TUBBY-RELATED 47 407 - -
Cone17ag0479 408 PRINTS Tubby superfamily signature 365 384 IPR000007 -
Cone17ag0479 408 PRINTS Tubby superfamily signature 337 353 IPR000007 -
Cone17ag0479 408 PRINTS Tubby superfamily signature 166 182 IPR000007 -
Cone17ag0479 408 PRINTS Tubby superfamily signature 319 336 IPR000007 -
Cone17ag0479 408 PRINTS Tubby superfamily signature 386 408 IPR000007 -
Cone17ag0479 408 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cone17ag0479 408 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Cone17ag0479 408 SUPERFAMILY Tubby C-terminal domain-like 100 408 IPR025659 -
Cone17ag0479 408 Pfam F-box domain 51 94 IPR001810 GO:0005515(InterPro)
Cone17ag0479 408 Gene3D Tubby Protein; Chain A 109 408 IPR025659 -
Cone17ag0479 408 SUPERFAMILY F-box domain 45 95 IPR036047 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0786 Cone-Chr14:4593835 Cone17ag0479 Cone-Chr17:2307427 1.10E-164 dispersed
Cone17ag0479 Cone-Chr17:2307427 Cone7ag1448 Cone-Chr7:10255177 1.61E-147 dispersed
Cone17ag0479 Cone-Chr17:2307427 Cone20ag0910 Cone-Chr20:6566008 2.47E-277 wgd
Cone17ag0479 Cone-Chr17:2307427 Cone4ag0175 Cone-Chr4:819037 8.40E-179 wgd
Cone17ag0479 Cone-Chr17:2307427 Cone7ag0180 Cone-Chr7:753931 1.29E-182 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45032 PF04818 CID 1.40E-12 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0479 K19600 - vvi:100244335 615.15