Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone17ag0492 | ATGATGGATCAGTACGGACGGATGCAGATTAGAAACGTGTCGGGTCAGCAACATGAATGGAGCTCCGCTGGTGAAGGAGGGGGAGGAGGAGGAGGAGGGGGCGGCGTAACCGGCCTCGAAGAATCGATGTGGCAAATGAGATTGGCGGGTAAAAGCGGAGAATCCTACCCGGAGTTTCCCGGCGTGCCCAACTGTGTATACTATATGCGAACCGGGTTCTGTGGTTATGGTACTAGATGCCGCTACAATCACCCTCCTGATCGTGCTTCTGTTGTGGTCGCGGTAAGAGCTACAGGCGAGTACCCCTTAAGACCAGGGGAGCCTGAATGTCAGTATTATTTGAAAACTAGGAGCTGTAAATACGGTGCATCTTGCAAGTTTCACCACCCCCTGCATGGAGTTGGATCCTTGAATCAGGCCCCAGTTAATCTCCGTGGATACCCACTTAGACCGGGCGAGAGGGAATGCTCCTACTATATTAAATCAGGGCAGTGCAAATTCGGCATTACCTGTAAATTCCATCACCCTCAAATGAACAGCCTCCCATTGCAGCTGCCTTGCACCCCTCAATTTTACCATCCGCAACTCCATCATTCTCCTTTAGTCTCTCTACCCGAACAATACGGGTCCACATCCACTAGTTTGAGGATAATAACCAGACCATCTTTGTTACCTAATTCTTACATGCAAGCAAGCTACGGCCCCGTCTTGCTCTCCCCCATAGTTGTTCCCATTTCCGGGTGGACCCCATATTCGGCACCTGTAACACCCTCCGTGCTATCTCCTGGTGCTGCTCATATGTCTTCTTCTTCAACAACTTCCTTTCTAAGACCTTATACTTCCATACCTTCATCTGTAGTGGGCCCTTCAGGCAGTAGCATCCAGAGTGCGAAAGTATTTCCGGCAAGACCCTGTGAACCTGAATGCCAGTATTATCTAAAAACAGGGGACTGTAAATTCGGATCATCTTGTCGGTTTCATCATCCTCATGACCTGGTCCCACCAAGTGCCGCTTGTGTCCTGAGTTCGCTTGGACTGCCCTTTCGTCCGGGGGTGCAACCTTGCACATTCTACTTGCAAAATGGACAATGTAAATTTGGATCGACGTGTAAATTCGACCATCCTATGAAATATAACAGTCAGAAAATGGCAGTTTCTCATTACCAGGTTGGGTCTCTTCTTGGTTCGCTGTCTCCTTCAACAATATCCTCTTTGAAAAATTCGGCCCAAGCTACTTCCTGGGTCCATGAATGA | 1254 | 49.04 | MMDQYGRMQIRNVSGQQHEWSSAGEGGGGGGGGGGVTGLEESMWQMRLAGKSGESYPEFPGVPNCVYYMRTGFCGYGTRCRYNHPPDRASVVVAVRATGEYPLRPGEPECQYYLKTRSCKYGASCKFHHPLHGVGSLNQAPVNLRGYPLRPGERECSYYIKSGQCKFGITCKFHHPQMNSLPLQLPCTPQFYHPQLHHSPLVSLPEQYGSTSTSLRIITRPSLLPNSYMQASYGPVLLSPIVVPISGWTPYSAPVTPSVLSPGAAHMSSSSTTSFLRPYTSIPSSVVGPSGSSIQSAKVFPARPCEPECQYYLKTGDCKFGSSCRFHHPHDLVPPSAACVLSSLGLPFRPGVQPCTFYLQNGQCKFGSTCKFDHPMKYNSQKMAVSHYQVGSLLGSLSPSTISSLKNSAQATSWVHE | 417 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 2390133 | 2392616 | - | Conep17aG0050600.1 | Cone17ag0492 | 455969 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone17ag0492 | 417 | Gene3D | - | 60 | 136 | - | - | |
| Cone17ag0492 | 417 | Gene3D | - | 137 | 184 | - | - | |
| Cone17ag0492 | 417 | Gene3D | - | 276 | 338 | - | - | |
| Cone17ag0492 | 417 | ProSiteProfiles | Zinc finger C3H1-type profile. | 303 | 331 | IPR000571 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | SUPERFAMILY | CCCH zinc finger | 108 | 132 | IPR036855 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | SUPERFAMILY | CCCH zinc finger | 351 | 377 | IPR036855 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | Gene3D | - | 348 | 393 | - | - | |
| Cone17ag0492 | 417 | ProSiteProfiles | Zinc finger C3H1-type profile. | 59 | 87 | IPR000571 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | ProSiteProfiles | Zinc finger C3H1-type profile. | 104 | 132 | IPR000571 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | SUPERFAMILY | CCCH zinc finger | 308 | 331 | IPR036855 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | SUPERFAMILY | CCCH zinc finger | 62 | 88 | IPR036855 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | SUPERFAMILY | CCCH zinc finger | 153 | 177 | IPR036855 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | ProSiteProfiles | Zinc finger C3H1-type profile. | 349 | 377 | IPR000571 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 307 | 329 | IPR000571 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 61 | 86 | IPR000571 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 351 | 376 | IPR000571 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 151 | 177 | IPR000571 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 105 | 130 | IPR000571 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | SMART | c3hfinal6 | 349 | 376 | IPR000571 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | SMART | c3hfinal6 | 104 | 131 | IPR000571 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | SMART | c3hfinal6 | 150 | 177 | IPR000571 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | SMART | c3hfinal6 | 303 | 330 | IPR000571 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | SMART | c3hfinal6 | 59 | 86 | IPR000571 | GO:0046872(InterPro) | |
| Cone17ag0492 | 417 | PANTHER | PROTEIN PHOSPHATASE RELATED | 50 | 377 | IPR050974 | GO:0003729(PANTHER) | |
| Cone17ag0492 | 417 | MobiDBLite | consensus disorder prediction | 13 | 35 | - | - | |
| Cone17ag0492 | 417 | ProSiteProfiles | Zinc finger C3H1-type profile. | 150 | 178 | IPR000571 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone14ag0775 | Cone-Chr14:4485559 | Cone17ag0492 | Cone-Chr17:2390133 | 3.92E-47 | dispersed | |
| Cone17ag0492 | Cone-Chr17:2390133 | Cone3ag0631 | Cone-Chr3:3113517 | 9.81E-27 | dispersed | |
| Cone11ag0862 | Cone-Chr11:7153370 | Cone17ag0492 | Cone-Chr17:2390133 | 2.01E-78 | wgd | |
| Cone17ag0492 | Cone-Chr17:2390133 | Cone18ag0696 | Cone-Chr18:3717195 | 7.70E-77 | wgd | |
| Cone17ag0492 | Cone-Chr17:2390133 | Cone20ag0922 | Cone-Chr20:6637882 | 6.44E-157 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45033 | PF02325 | YGGT | 2.80E-15 | No_clan | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone17ag0492 | - | - | - | 0.0 |