Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0499 ATGGTCGACAACATACGCCATAGTACTTCTATTACTACTGCTACTATTACTACTTCTTCTTCACAACTTGAAGTTAGAGAAGGATTTAAGAACTATGATTTTATTAGCATTAATGCTTCAAGTGATCGAGATGGAGAAGGATCTGGATCAGTAATGGTTTTCAAAGAGCAAGACCGGTTGCTTCCGATTGCAAATGTTGGAAAGATCATGAAGAAGATTTTACCCCCAAACGCAAAGATCTCAAAAGAAGCAAAAGAAACCATGCAAGAATGTGTGTCTGAGTTCATAAGCTTTGTGACAGGCGAGGCTTCTGAAAAGTGTTATAAAGAGAAGCGCAAGACCGTTAACGGGGACGATATCTGCTGGGCTATGGCTTCTTTGGGTTTTGATGATTATTCTGAACCCTTGAAGAAGTATTTGCTTAGGTTTAGAGAGGTTGAAGGAGATTATAGATCAAGTACTACATCAGCATCAGGTCATCAACAATTTGGCAAAGGTACTAATCATAATAATATTCACAACTTTGATGATCATGATGAGGATCAAGAGAAGAATAACAGTACTCTTGGTACTTATGAAATTTCCCAGAAAAGGACTAAAAGACTTCGCAAGAAATGA 618 37.7 MVDNIRHSTSITTATITTSSSQLEVREGFKNYDFISINASSDRDGEGSGSVMVFKEQDRLLPIANVGKIMKKILPPNAKISKEAKETMQECVSEFISFVTGEASEKCYKEKRKTVNGDDICWAMASLGFDDYSEPLKKYLLRFREVEGDYRSSTTSASGHQQFGKGTNHNNIHNFDDHDEDQEKNNSTLGTYEISQKRTKRLRKK 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2465361 2466139 + Conep17aG0051300.1 Cone17ag0499 455976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0499 205 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Cone17ag0499 205 PRINTS CCAAT-binding transcription factor subunit A signature 107 125 - -
Cone17ag0499 205 PRINTS CCAAT-binding transcription factor subunit A signature 126 144 - -
Cone17ag0499 205 FunFam Nuclear transcription factor Y subunit B-3 49 175 - -
Cone17ag0499 205 MobiDBLite consensus disorder prediction 152 205 - -
Cone17ag0499 205 SUPERFAMILY Histone-fold 57 162 IPR009072 GO:0046982(InterPro)
Cone17ag0499 205 ProSitePatterns NF-YB/HAP3 subunit signature. 91 107 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag0499 205 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 48 183 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone17ag0499 205 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 60 124 IPR003958 -
Cone17ag0499 205 Gene3D Histone, subunit A 52 193 IPR009072 GO:0046982(InterPro)
Cone17ag0499 205 MobiDBLite consensus disorder prediction 171 186 - -
Cone17ag0499 205 MobiDBLite consensus disorder prediction 152 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0770 Cone-Chr14:4418786 Cone17ag0499 Cone-Chr17:2465361 3.84E-48 dispersed
Cone17ag0499 Cone-Chr17:2465361 Cone19ag1279 Cone-Chr19:8705820 4.16E-48 dispersed
Cone17ag0499 Cone-Chr17:2465361 Cone20ag0927 Cone-Chr20:6668636 9.28E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45034 PF02773 S-AdoMet_synt_C 7.20E-61 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0499 K08065 - mdm:103432559 190.274