Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0527 ATGATGATTCCTTGGGGAGGCGTAAGTTGCTGTATGAGCGCGGTTGCTCTGCATCTTCTTGGAAGGAGTAGTGGCAGGGATGCAGAGCTATTGAAATCAGTTAAGCGGGTCAATCAGTTGAAGGAATTGGCTCAATTGCTTGATGCTGAGTGTATAGTACCTTTGGTTGTGGCAATTTCTGGAAGAGTGGGCTCTGAAAACCCAATCAGCTGCGAGTTCAGTGGCTTACGGGGTGTGATTGTGGAGGAAACCGCAGAACAACATTTTCTGAAACACAATGATGCTGGTTCATGGATACAAGATTCTGCTCTGATGCTCTCCATGAGCAAAGAGGTCCCCTGGTACCTGGACGATGGGACTGCTAGGGCATTTGTGGTGGGAGCACGTGCTGCCAATGGTTTCTTATTACCAGTAGCAAGTGAGGTGTTTGAAGAGTCAGGTAGATCCCTTGTACGTGGAACATTAGATTATCTACAAGGTCTTAAGATGCTTGGAGTTAAGAGAATTGAGCGGGTACTTCCAACGGGCACTTCCTTGACTGTAGTTGGTGAGGCTGCCAAAGATGATGTTGGTACCGTTCGGATCCAGAGACCCCACAAGGGGCCATTCTATGTCACCCCAAAAACAATTGACCAGCTCATTGCCAATCTTGGGAAGTGGGCAAGGTGGTACAAGTATGCCTCTATGGGTTTAACAGTATTTGGTATATATCTTATTGCTAAGCATGCCATTCAATTTATAATGGAAAGAAAGCGCTTTTGGGAATTGCAGAAAAGAGTTCTAGCTGCTGCTGCTAAGAGATCTGGCCAAGACAGTGAAGGTCAAAATGAACAGGCTGACACAACATTAGATGGTACCAAGAGAGATCGGCTACCAGATCTCTGTGTAATATGCCTTGAACAAGACTATGATGCTGTTTTTGTCCCGTGTGGTCATATGTGCTGTTGTGTAACATGCTCCTCTCACTTGACCAACTGTCCTCTTTGTCGGCAAAGGATTGATCAAGTCGTTAAGACTTTCCGTCATTGA 1029 45.87 MMIPWGGVSCCMSAVALHLLGRSSGRDAELLKSVKRVNQLKELAQLLDAECIVPLVVAISGRVGSENPISCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTARAFVVGARAANGFLLPVASEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDVGTVRIQRPHKGPFYVTPKTIDQLIANLGKWARWYKYASMGLTVFGIYLIAKHAIQFIMERKRFWELQKRVLAAAAKRSGQDSEGQNEQADTTLDGTKRDRLPDLCVICLEQDYDAVFVPCGHMCCCVTCSSHLTNCPLCRQRIDQVVKTFRH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2618620 2623787 - Conep17aG0054200.1 Cone17ag0527 456004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0527 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 341 IPR013083 -
Cone17ag0527 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
Cone17ag0527 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 336 - -
Cone17ag0527 342 SUPERFAMILY RING/U-box 294 336 - -
Cone17ag0527 342 PANTHER - 2 339 IPR044231 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone17ag0527 342 CDD RING-HC_LRSAM1 295 338 - -
Cone17ag0527 342 Pfam E3 Ubiquitin ligase 86 235 IPR022170 GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0527 Cone-Chr17:2618620 Cone20ag0883 Cone-Chr20:6424061 7.08E-246 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0527 K15688 - mdm:103449075 600.127