Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0566 ATGGTTTTTCGAGCAGATAAGATCGACTTCAAGAGCTGGGATGTTCAGCTAGACAAGCACTTGAGCCGGGTTTTTTCGAGAGATAGAGAGGTGCCTACAAAGAAGGAAGAGTGGGAGATTGATCTGTCTAAGCTGGATATAAGACTTCTTGTGGCTCATGGCACTTATGGAACTGTCTACAAAGGCGTCTATGATGACCAAGATGTTGCTGTAAAAGTGTTGGACTGGGGAGAGGATGGAATGACCACAGCTGCTGAAACTGCTGCTCTTCGAGCGTCATTTCGGCAAGAAGTTGCTGTTTGGCATAAGCTTGAGCACCGTAATGTTACCAAGTTCTTTGGAGCTTCAATGGGAACTTCCAATCTAAAAATCCCTTCCAAAAGCACAACAATCGAAAATCAGAATTCTTTCCCTTCAAGGGCTTGTTGCGTCATTGTGGAGTATCTTCCAGGTGGGACTCTCAAGAACTATTTGATCAGAAACCGTAGAAAGAAGCTCGCACTTAAGATCGTGATTCAACTTGCATTGGATCTTGCCAGAGGGTTGAGTTATCTTCACTCGAAAAAGATTGTTCACCGAGACATTAAAACAGAAAACTTGTTACTAGATGCTCATAGAACACTCAAAATCGTTGATTTTGGCGTTGCTCGGGTTGAAGCTCAGAATCCAAGGGATATGACTGGAGAAACTGGTACCCTTGGTTATATGGCCCCAGAGGTCCTTGATGGTAAACCTTACAATAGAAAATGCGATGTTTACAGTTTTGGTATATGCTTATGGGAGACATACTGTTGCGACATGCCTTATCCTGATCTCAGTTTCGCTGAAGTTTCTTCGGCTGTTGTGCGACAGAAATTCCGAGATGTTGTCCGAGTTCGTTGGCGAATATAA 891 43.55 MVFRADKIDFKSWDVQLDKHLSRVFSRDREVPTKKEEWEIDLSKLDIRLLVAHGTYGTVYKGVYDDQDVAVKVLDWGEDGMTTAAETAALRASFRQEVAVWHKLEHRNVTKFFGASMGTSNLKIPSKSTTIENQNSFPSRACCVIVEYLPGGTLKNYLIRNRRKKLALKIVIQLALDLARGLSYLHSKKIVHRDIKTENLLLDAHRTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEVSSAVVRQKFRDVVRVRWRI 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2904712 2907607 - Conep17aG0058200.1 Cone17ag0566 456043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0566 296 CDD STKc_MAP3K-like 51 287 - -
Cone17ag0566 296 Pfam Protein kinase domain 53 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0566 296 Gene3D Phosphorylase Kinase; domain 1 33 127 - -
Cone17ag0566 296 Gene3D Transferase(Phosphotransferase) domain 1 132 292 - -
Cone17ag0566 296 PIRSF ILK 134 295 - -
Cone17ag0566 296 PIRSF ILK 17 129 - -
Cone17ag0566 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0566 296 ProSiteProfiles Protein kinase domain profile. 45 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0566 296 SMART serkin_6 45 295 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0566 296 FunFam Kinase suppressor of Ras 1 34 129 - -
Cone17ag0566 296 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 41 287 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Cone17ag0566 296 SUPERFAMILY Protein kinase-like (PK-like) 31 290 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0566 Cone-Chr17:2904712 Cone7ag0269 Cone-Chr7:1118657 2.50E-173 dispersed
Cone17ag0566 Cone-Chr17:2904712 Cone4ag0260 Cone-Chr4:1162492 3.33E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82261 PF12776 Myb_DNA-bind_3 6.80E-32 CL0123 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0566 - - - 0.0