Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0574 ATGCAGTTTCCGGCGGCAGCCGCCTGCATGTCTAACTCAACTACTAACTCTTTGTCTGAGGAAGCTAATAGTGTCTCTTCTTCTGGTCCTAGATTTCATCTTGTCCAAGCTGATGATCACTTTTCTGGATTATTAATTAACCCTTTGCTTTCCACTTCTACTACTTTCAATGTTTCCCATGATGATCCTGATCAGCAACTCCCACAAAAGGTTAAAAAGAAGAGAAACCTTCCGGGAAACCCAGACCCAGATGCAGAAGTGATTGCCCTATCGCCAAAGACTTTACTGGCGACGAACAGATTTGTGTGTGAGATATGCAACAAGGGTTTTCAGAGAGATCAGAATCTTCAACTGCATAGAAGAGGGCACAACTTGCCTTGGAAGCTGAAGCAAAGGAACAACAAGGAGATGATAAGGAAGAAGGCTTATGTTTGTCCAGAACCGTCTTGTGTTCACCACCATCCTTCTAGAGCTTTAGGAGATCTAACTGGAATCAAGAAACATTTTTGCAGGAAGCATGGAGAGAAAAAGTGGAAGTGTGAGAAATGCTCTAAGATCTATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAACATGTGGTACTAGAGAATACAAATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTTATAACCCACAGAGCATTCTGCAATGCATTGGCTGAAGAAAGTGCAAGAGTCTCTGCAAATCAATTAGCCGCCATCTCCATCAATAATACTAATACTTATAATTATCATAATACCAATATTACCCCTCGCCCTCAGTCTCTCTTTCCCTTCCCGATAACCCAATTACAGCAGCACTCCACTTCCTGGCCAGATCATCATCACCTACCTGCTTTCCTAAATCCTAACCCTAATATTGCCATGAATCCCTTATTAGGAAACCCTAACCATAATAATCACAACCCATTTCATCATCTGATCAAATCTGAGGTATTACTAGAGCCAGCTCATGATGATGATCATCACGGCCATAATTTTCATCACCAGACGAATATCCCCATCTCCTCCCCTAATAAGTCGTCTTCTCCATTATTCATAAACATTAATGGGTCCCACATGTTGACCAGTTGTGGTAGTACTGCTCAACAGCAGCAGCAGCAAGAGGCCGCGTCAGCAAACTGCCACATGTCAGCCACTGCACTACTTCAGAAGGCTGCATCGGTGGGTCCCTCTGCAGTATCGAACAGCAGCTGCCCTGATCGTCATCTTCATGGCCAGTATTACTACTCTACGGGTCATGATCACATGATGACCGCGACTCATCACCGCGATCTAAACGTGGACACAGTGAATCAGGTCCCACTACTAGTACCGGATGATCACGACATTGCCGCGTGGCAGAAGAGTGATCGCAGTTTGACCAGGGACTTTCTGGGTTTGACTCATGAAGATCATCATCATCATCGTCAAGGAGCTGTAGCTAGAGCTGGTTCGGGTAGTACTACTACTGGAAGCTGCTATGGAAATGGAAATGCCGGCCATGGCTATGATCATCATGCAGTTAACGTTATGAGCGTGAAGGATACGCTAACATACACCAGAGGCGTAGGTTTTGATGATCATCACGGACGTGATGATGATGATGATGATGCAGGTTTTGGATTCTCTGAGCCAGCTGCTCCAGATCAAACATGGGGTGACTTCTAG 1680 44.76 MQFPAAAACMSNSTTNSLSEEANSVSSSGPRFHLVQADDHFSGLLINPLLSTSTTFNVSHDDPDQQLPQKVKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEMIRKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCNALAEESARVSANQLAAISINNTNTYNYHNTNITPRPQSLFPFPITQLQQHSTSWPDHHHLPAFLNPNPNIAMNPLLGNPNHNNHNPFHHLIKSEVLLEPAHDDDHHGHNFHHQTNIPISSPNKSSSPLFININGSHMLTSCGSTAQQQQQQEAASANCHMSATALLQKAASVGPSAVSNSSCPDRHLHGQYYYSTGHDHMMTATHHRDLNVDTVNQVPLLVPDDHDIAAWQKSDRSLTRDFLGLTHEDHHHHRQGAVARAGSGSTTTGSCYGNGNAGHGYDHHAVNVMSVKDTLTYTRGVGFDDHHGRDDDDDDAGFGFSEPAAPDQTWGDF 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2964295 2966989 + Conep17aG0059000.1 Cone17ag0574 456051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0574 559 FunFam protein indeterminate-domain 12-like 80 149 - -
Cone17ag0574 559 MobiDBLite consensus disorder prediction 65 80 - -
Cone17ag0574 559 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 204 241 - -
Cone17ag0574 559 Gene3D Classic Zinc Finger 171 238 - -
Cone17ag0574 559 MobiDBLite consensus disorder prediction 532 559 - -
Cone17ag0574 559 Gene3D Classic Zinc Finger 80 149 - -
Cone17ag0574 559 Pfam Zinc finger, C2H2 type 101 123 IPR013087 -
Cone17ag0574 559 FunFam protein indeterminate-domain 5, chloroplastic-like 156 235 - -
Cone17ag0574 559 MobiDBLite consensus disorder prediction 58 85 - -
Cone17ag0574 559 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Cone17ag0574 559 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 123 IPR013087 -
Cone17ag0574 559 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 139 173 - -
Cone17ag0574 559 SMART c2h2final6 178 198 IPR013087 -
Cone17ag0574 559 SMART c2h2final6 101 123 IPR013087 -
Cone17ag0574 559 SUPERFAMILY beta-beta-alpha zinc fingers 100 198 IPR036236 -
Cone17ag0574 559 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 61 483 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone17ag0574 559 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 177 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0256 Cone-Chr10:1223433 Cone17ag0574 Cone-Chr17:2964295 1.38E-103 dispersed
Cone10ag0771 Cone-Chr10:3915018 Cone17ag0574 Cone-Chr17:2964295 6.96E-99 dispersed
Cone10ag1257 Cone-Chr10:9626976 Cone17ag0574 Cone-Chr17:2964295 1.34E-104 dispersed
Cone17ag0574 Cone-Chr17:2964295 Cone3ag1314 Cone-Chr3:32052872 8.07E-104 dispersed
Cone17ag0574 Cone-Chr17:2964295 Cone20ag0834 Cone-Chr20:5986896 1.75e-318 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45039 PF01590 GAF 1.80E-14 CL0161 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0574 K25870 - csv:101208253 440.269