Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone17ag0579 | ATGTCAACATTACTAGTACTAAACACCACCAAAGCCCAAAGGCGATGGCGATTTGCTTACGCAGCAATCTATTCGTTCCGGGCTATGCTATCTCTTTCCAAAGAGTTTATATCTAAACAAAATGATTACATCGAATATGGGTTCTTCCATGATTTCGAACCATTTAGTAGTTCCTCTCATTCCATTCATCAAACTGCAGATGATCAGATTGAGGACGTCCAAGCCCAGAACATGGCACAAAAGCGATGGAGAGTTGTCTTTCTGACGATTCGGTTTGTCCGAGCCATGGTGTCCCTTTCCCAAATGATGGTTGCAGAGAAGGAGAAATTTGTAGACTCCAAACCAAAGGAGGATGACTCTTACATCCTTACTACTACGGTTACTGACATTGGTGTTAATATCGATCAGAAAAAACTTGGGGAAATTGTGAAGGACAAGGACTTAATAGCACTTCACGGGATCGGACATGTTCTAGGCGTTGCGGACTCGCTCGGAACAAATCCCGAGAGCGGAATTCGTGATGATGATGATGTCAGCAAGCGGCGTGAGATGTTCGGGTCAAATACTTACAAGAGGAAACCTCTCAAAGGGTTCTTCCATTTCGTCCTCGAAGCATTCAAGGACCCCACCATTATCATCCTTCTAATATGTGCCGGCTTGTCCTTAGGTTTCGGAATCAAAGAAGAAGGGGCGAAGGAAGGATGGTATGAAGGAGGAAGTATATTCGTAGCAGTGTTTCTAGTAGTGGTCGTTTCCGCTATAAGTAACTTCAGACAAGAAACTCAGTTCGAAAAGTTGTCCAAAATAGGAAACAACATCAAAGTAAAAGTATTGAGAAACGGAAGGGAAATAGAGATTTCCATCTTTGATATTGTGGTTGGAGATGTCGTGTTTTTAAATCTAGGCGACCAAATTCCAGCTGATGGGTTGTTCCTACACGGGCATTCACTTCAAGTGGATGAATCCAGCATGACGGGAGAGAGCGACCACGTGGAAGTAAATTATAAACATAGACCCTTCTTGTTTTCGGGTTCGAAAGTAGTAGACGGATATGCTCGGATGCTTGTGACCTCAGTGGGAATGGACACGGCGTGGGGTGAACTCATGAGCTCGGTTTCCGGGGATTCAACTGAACAAACACCGTTGCAAGTTCGGCTAAATAAACTTACCTCCACTATCGGGAAGGTGGGCCTCTTAGTTGCTTTTCTAGTCCTTCTTGTTCTGCTAATCCGTTATTTTACGGGGAATACGGAGGATAAGAATGGGATGAGGGAGTATAATGGCAGTAAGACGAATATAAACAGCGTGTTCAATGCGATTATCCGAATTGTATCAAATGCAGTTACCATAGTGGTGGTTGCTATCCCAGAAGGATTACCATTGGCCGTGACTCTAACACTTGCTTACTCGATGAAGAGAATGATGGGAGATAATGCCATGGTGAGGAAGCTTTCGGCTTGTGAGACAATGGGGTCTGCTACGGTTATTTGCACGGACAAAACGGGCACGTTGACTTTGAACCAAATGCAAGTTACCAAGTTTTGGCTCGGGCTAGAAATCTTTGGGAAAGATTCCCCTGTTCAAATCCGACCAGATGTTTTGGAGTTGATTTATCAAGTAGTCGGGCTGAACACGACCGGAAGCGTCTACAAACCTTTATCCGCATCGTCCAAACCGGAAGTTTCTGGAAGTCCAACTGAGAAAGCAATTCTCTCTTGGGCGGTTTCGGAACTAGGCATGGACATGGAGAAGTTGAAGAAATCTTACACTCTTGTCCATGTCGAGACGTTTAACTCGGAGAAGAAACGAAGCGGTGTCGCAATAAGAAAAAAAAGCTCCGCAAACAACAACATTCTTATACATTGGAAAGGAGCCGCCGAGATAATTCTAGAAATGTGTACGAACTATTGCGAAATCAACGGGACTATAAAACCCCTAGATGATAAAGATGCACGAACTAGATACGAGAAAATAATCCAAGCAATGGCAGCAAGCAGCCTTCGCTGCATTGCTTTCGCTTACAAGCAAATCCATGAAGAAGAAATGGAATATAAAGATCATGATAAGACCAGCCCAAGGCTCAAGGAAGACGGCTTGACCTTCCTAGGAATCATTGGCATCAAGGACCCATGTAGACCAGGGGTGAAAGCAGCCGTAAAAACATGCAAAGCAGCCGGAGTTTTGATCAAAATGATAACAGGAGATAACATTTTCACGGCAAAAGCCATAGCAACAGAATGTGGAATACTAGACCCGGATATGAAACTAAAAACTGAAGAAGTAATCATAGAAGGGTCCGAATTTCGAAACTTTACACACGAAGAGAGAATGCAAAAGGTCGATAATATCCTCGTCATGGCAAGATCCTCTCCGTTCGACAAGCTACTAATGGTCCAATGCTTGAAACGAAAGGGCCATGTAGTTGCAGTCACTGGAGACGGAACGAACGATGCACCAGCTCTAAAAGAAGCCGATATAGGACTCTCCATGGGAATAGAAGGAACCGAGGTGGCTAAAGAGAGTTCAGACATAGTCATCTTAGATGATAACTTCAACTCCGTAGCAACAGTTCTAAGGTGGGGCAGGTGCGTATACAACAATATACAAAAATTTATCCAATTCCAGTTGACGGTTAATGTAGCGGCTCTAGTAATCAACTTTATAGCTGCAGTTTCGGCTGGAAAAGTTCCTTTAACTGCCGTTCAGTTATTGTGGGTGAATCTCATTATGGACACATTAGGTGCTCTTGCTTTAGCTACTGAAAAACCAACCGACGAATTAATGATGAAACCGCCTGTGGGCCGGACCGAGCCGCTCATAACAAACATCATGTGGCGGAACCTTCTAGCTCAAGCCTTATACCAAATCTCTGTCCTTTTGACTTTCGAGTTTAGGGGCGAGTCTATTTTTAATGTGAGTGAGGCAGTTAAAGATACCCTTATTTTCAACACATTTGTGCTGTGTCAAGTGTTCAATGAGTTCAACTCGAGGAAGATGGAGAAGATGAATGTTTTTGAAGGTATTTTGGGGAATAAGTTGTTTATAGGGATTGTAGGGGGGACGATTGTTCTTCAGGCAGTCATGGTGGAGTTCTTAAAGAATTTTGCAAATACGGAGAGGTTGAATTGGTGGCAGTGGGGAGTTTGTGTTGCTTTTGCAGGTCTTTCTTGGCCGATTGGTTGGGTTGTTAAGCTTGTGCCGGTATCGAAAAAACCGTATTTTTTTTACCTTAAGGAGCAGAAAGCCTTGTTTGTTAAGATTATATTATAG | 3270 | 43.46 | MSTLLVLNTTKAQRRWRFAYAAIYSFRAMLSLSKEFISKQNDYIEYGFFHDFEPFSSSSHSIHQTADDQIEDVQAQNMAQKRWRVVFLTIRFVRAMVSLSQMMVAEKEKFVDSKPKEDDSYILTTTVTDIGVNIDQKKLGEIVKDKDLIALHGIGHVLGVADSLGTNPESGIRDDDDVSKRREMFGSNTYKRKPLKGFFHFVLEAFKDPTIIILLICAGLSLGFGIKEEGAKEGWYEGGSIFVAVFLVVVVSAISNFRQETQFEKLSKIGNNIKVKVLRNGREIEISIFDIVVGDVVFLNLGDQIPADGLFLHGHSLQVDESSMTGESDHVEVNYKHRPFLFSGSKVVDGYARMLVTSVGMDTAWGELMSSVSGDSTEQTPLQVRLNKLTSTIGKVGLLVAFLVLLVLLIRYFTGNTEDKNGMREYNGSKTNINSVFNAIIRIVSNAVTIVVVAIPEGLPLAVTLTLAYSMKRMMGDNAMVRKLSACETMGSATVICTDKTGTLTLNQMQVTKFWLGLEIFGKDSPVQIRPDVLELIYQVVGLNTTGSVYKPLSASSKPEVSGSPTEKAILSWAVSELGMDMEKLKKSYTLVHVETFNSEKKRSGVAIRKKSSANNNILIHWKGAAEIILEMCTNYCEINGTIKPLDDKDARTRYEKIIQAMAASSLRCIAFAYKQIHEEEMEYKDHDKTSPRLKEDGLTFLGIIGIKDPCRPGVKAAVKTCKAAGVLIKMITGDNIFTAKAIATECGILDPDMKLKTEEVIIEGSEFRNFTHEERMQKVDNILVMARSSPFDKLLMVQCLKRKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSAGKVPLTAVQLLWVNLIMDTLGALALATEKPTDELMMKPPVGRTEPLITNIMWRNLLAQALYQISVLLTFEFRGESIFNVSEAVKDTLIFNTFVLCQVFNEFNSRKMEKMNVFEGILGNKLFIGIVGGTIVLQAVMVEFLKNFANTERLNWWQWGVCVAFAGLSWPIGWVVKLVPVSKKPYFFYLKEQKALFVKIIL | 1089 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 3019882 | 3023752 | - | Conep17aG0059700.1 | Cone17ag0579 | 456056 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone17ag0579 | 1089 | FunFam | Calcium-transporting ATPase | 249 | 373 | - | - | |
| Cone17ag0579 | 1089 | PRINTS | Sodium/potassium-transporting ATPase signature | 620 | 638 | - | - | |
| Cone17ag0579 | 1089 | PRINTS | Sodium/potassium-transporting ATPase signature | 490 | 511 | - | - | |
| Cone17ag0579 | 1089 | NCBIfam | HAD-IC family P-type ATPase | 241 | 414 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone17ag0579 | 1089 | NCBIfam | HAD-IC family P-type ATPase | 785 | 892 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone17ag0579 | 1089 | NCBIfam | HAD-IC family P-type ATPase | 438 | 517 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone17ag0579 | 1089 | SUPERFAMILY | HAD-like | 495 | 916 | IPR036412 | - | |
| Cone17ag0579 | 1089 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 499 | 505 | IPR018303 | - | |
| Cone17ag0579 | 1089 | SFLD | p-type atpase | 479 | 864 | IPR044492 | - | |
| Cone17ag0579 | 1089 | Pfam | E1-E2 ATPase | 274 | 475 | - | - | |
| Cone17ag0579 | 1089 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 159 | 1070 | IPR023298 | - | |
| Cone17ag0579 | 1089 | Gene3D | - | 494 | 856 | IPR023214 | - | |
| Cone17ag0579 | 1089 | FunFam | Calcium-transporting ATPase | 828 | 1070 | - | - | |
| Cone17ag0579 | 1089 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 504 | 707 | IPR023299 | GO:0000166(InterPro) | |
| Cone17ag0579 | 1089 | FunFam | Calcium-transporting ATPase | 204 | 261 | - | - | |
| Cone17ag0579 | 1089 | SFLD | Haloacid Dehalogenase | 479 | 864 | - | - | |
| Cone17ag0579 | 1089 | PRINTS | P-type cation-transporting ATPase superfamily signature | 725 | 735 | - | - | |
| Cone17ag0579 | 1089 | PRINTS | P-type cation-transporting ATPase superfamily signature | 835 | 847 | - | - | |
| Cone17ag0579 | 1089 | PRINTS | P-type cation-transporting ATPase superfamily signature | 320 | 334 | - | - | |
| Cone17ag0579 | 1089 | PRINTS | P-type cation-transporting ATPase superfamily signature | 703 | 714 | - | - | |
| Cone17ag0579 | 1089 | PRINTS | P-type cation-transporting ATPase superfamily signature | 811 | 830 | - | - | |
| Cone17ag0579 | 1089 | PRINTS | P-type cation-transporting ATPase superfamily signature | 497 | 511 | - | - | |
| Cone17ag0579 | 1089 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 150 | 1068 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Cone17ag0579 | 1089 | Pfam | Cation transporting ATPase, C-terminus | 896 | 1066 | IPR006068 | - | |
| Cone17ag0579 | 1089 | CDD | P-type_ATPase_Ca_PMCA-like | 178 | 944 | - | - | |
| Cone17ag0579 | 1089 | Pfam | Cation transporter/ATPase, N-terminus | 159 | 221 | IPR004014 | - | |
| Cone17ag0579 | 1089 | SUPERFAMILY | Calcium ATPase, transduction domain A | 272 | 372 | IPR008250 | - | |
| Cone17ag0579 | 1089 | Gene3D | - | 204 | 1060 | - | - | |
| Cone17ag0579 | 1089 | FunFam | Calcium-transporting ATPase | 507 | 710 | - | - | |
| Cone17ag0579 | 1089 | SMART | Cation_ATPase_N_a_2 | 153 | 226 | IPR004014 | - | |
| Cone17ag0579 | 1089 | PANTHER | CATION TRANSPORTING ATPASE | 115 | 1069 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Cone17ag0579 | 1089 | Pfam | haloacid dehalogenase-like hydrolase | 495 | 825 | - | - | |
| Cone17ag0579 | 1089 | Gene3D | - | 507 | 710 | IPR023299 | GO:0000166(InterPro) | |
| Cone17ag0579 | 1089 | Gene3D | - | 175 | 373 | - | - | |
| Cone17ag0579 | 1089 | FunFam | Calcium-transporting ATPase | 705 | 856 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag0579 | Cone-Chr17:3019882 | Cone7ag0285 | Cone-Chr7:1209868 | 0 | dispersed | |
| Cone10ag0678 | Cone-Chr10:3288120 | Cone17ag0579 | Cone-Chr17:3019882 | 0 | wgd | |
| Cone17ag0579 | Cone-Chr17:3019882 | Cone20ag0829 | Cone-Chr20:5887976 | 0 | wgd | |
| Cone17ag0579 | Cone-Chr17:3019882 | Cone3ag0703 | Cone-Chr3:3598745 | 2.49E-111 | wgd | |
| Cone17ag0579 | Cone-Chr17:3019882 | Cone4ag0278 | Cone-Chr4:1262302 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone17ag0579 | K01537 | - | vvi:100259561 | 1396.33 |