Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0579 ATGTCAACATTACTAGTACTAAACACCACCAAAGCCCAAAGGCGATGGCGATTTGCTTACGCAGCAATCTATTCGTTCCGGGCTATGCTATCTCTTTCCAAAGAGTTTATATCTAAACAAAATGATTACATCGAATATGGGTTCTTCCATGATTTCGAACCATTTAGTAGTTCCTCTCATTCCATTCATCAAACTGCAGATGATCAGATTGAGGACGTCCAAGCCCAGAACATGGCACAAAAGCGATGGAGAGTTGTCTTTCTGACGATTCGGTTTGTCCGAGCCATGGTGTCCCTTTCCCAAATGATGGTTGCAGAGAAGGAGAAATTTGTAGACTCCAAACCAAAGGAGGATGACTCTTACATCCTTACTACTACGGTTACTGACATTGGTGTTAATATCGATCAGAAAAAACTTGGGGAAATTGTGAAGGACAAGGACTTAATAGCACTTCACGGGATCGGACATGTTCTAGGCGTTGCGGACTCGCTCGGAACAAATCCCGAGAGCGGAATTCGTGATGATGATGATGTCAGCAAGCGGCGTGAGATGTTCGGGTCAAATACTTACAAGAGGAAACCTCTCAAAGGGTTCTTCCATTTCGTCCTCGAAGCATTCAAGGACCCCACCATTATCATCCTTCTAATATGTGCCGGCTTGTCCTTAGGTTTCGGAATCAAAGAAGAAGGGGCGAAGGAAGGATGGTATGAAGGAGGAAGTATATTCGTAGCAGTGTTTCTAGTAGTGGTCGTTTCCGCTATAAGTAACTTCAGACAAGAAACTCAGTTCGAAAAGTTGTCCAAAATAGGAAACAACATCAAAGTAAAAGTATTGAGAAACGGAAGGGAAATAGAGATTTCCATCTTTGATATTGTGGTTGGAGATGTCGTGTTTTTAAATCTAGGCGACCAAATTCCAGCTGATGGGTTGTTCCTACACGGGCATTCACTTCAAGTGGATGAATCCAGCATGACGGGAGAGAGCGACCACGTGGAAGTAAATTATAAACATAGACCCTTCTTGTTTTCGGGTTCGAAAGTAGTAGACGGATATGCTCGGATGCTTGTGACCTCAGTGGGAATGGACACGGCGTGGGGTGAACTCATGAGCTCGGTTTCCGGGGATTCAACTGAACAAACACCGTTGCAAGTTCGGCTAAATAAACTTACCTCCACTATCGGGAAGGTGGGCCTCTTAGTTGCTTTTCTAGTCCTTCTTGTTCTGCTAATCCGTTATTTTACGGGGAATACGGAGGATAAGAATGGGATGAGGGAGTATAATGGCAGTAAGACGAATATAAACAGCGTGTTCAATGCGATTATCCGAATTGTATCAAATGCAGTTACCATAGTGGTGGTTGCTATCCCAGAAGGATTACCATTGGCCGTGACTCTAACACTTGCTTACTCGATGAAGAGAATGATGGGAGATAATGCCATGGTGAGGAAGCTTTCGGCTTGTGAGACAATGGGGTCTGCTACGGTTATTTGCACGGACAAAACGGGCACGTTGACTTTGAACCAAATGCAAGTTACCAAGTTTTGGCTCGGGCTAGAAATCTTTGGGAAAGATTCCCCTGTTCAAATCCGACCAGATGTTTTGGAGTTGATTTATCAAGTAGTCGGGCTGAACACGACCGGAAGCGTCTACAAACCTTTATCCGCATCGTCCAAACCGGAAGTTTCTGGAAGTCCAACTGAGAAAGCAATTCTCTCTTGGGCGGTTTCGGAACTAGGCATGGACATGGAGAAGTTGAAGAAATCTTACACTCTTGTCCATGTCGAGACGTTTAACTCGGAGAAGAAACGAAGCGGTGTCGCAATAAGAAAAAAAAGCTCCGCAAACAACAACATTCTTATACATTGGAAAGGAGCCGCCGAGATAATTCTAGAAATGTGTACGAACTATTGCGAAATCAACGGGACTATAAAACCCCTAGATGATAAAGATGCACGAACTAGATACGAGAAAATAATCCAAGCAATGGCAGCAAGCAGCCTTCGCTGCATTGCTTTCGCTTACAAGCAAATCCATGAAGAAGAAATGGAATATAAAGATCATGATAAGACCAGCCCAAGGCTCAAGGAAGACGGCTTGACCTTCCTAGGAATCATTGGCATCAAGGACCCATGTAGACCAGGGGTGAAAGCAGCCGTAAAAACATGCAAAGCAGCCGGAGTTTTGATCAAAATGATAACAGGAGATAACATTTTCACGGCAAAAGCCATAGCAACAGAATGTGGAATACTAGACCCGGATATGAAACTAAAAACTGAAGAAGTAATCATAGAAGGGTCCGAATTTCGAAACTTTACACACGAAGAGAGAATGCAAAAGGTCGATAATATCCTCGTCATGGCAAGATCCTCTCCGTTCGACAAGCTACTAATGGTCCAATGCTTGAAACGAAAGGGCCATGTAGTTGCAGTCACTGGAGACGGAACGAACGATGCACCAGCTCTAAAAGAAGCCGATATAGGACTCTCCATGGGAATAGAAGGAACCGAGGTGGCTAAAGAGAGTTCAGACATAGTCATCTTAGATGATAACTTCAACTCCGTAGCAACAGTTCTAAGGTGGGGCAGGTGCGTATACAACAATATACAAAAATTTATCCAATTCCAGTTGACGGTTAATGTAGCGGCTCTAGTAATCAACTTTATAGCTGCAGTTTCGGCTGGAAAAGTTCCTTTAACTGCCGTTCAGTTATTGTGGGTGAATCTCATTATGGACACATTAGGTGCTCTTGCTTTAGCTACTGAAAAACCAACCGACGAATTAATGATGAAACCGCCTGTGGGCCGGACCGAGCCGCTCATAACAAACATCATGTGGCGGAACCTTCTAGCTCAAGCCTTATACCAAATCTCTGTCCTTTTGACTTTCGAGTTTAGGGGCGAGTCTATTTTTAATGTGAGTGAGGCAGTTAAAGATACCCTTATTTTCAACACATTTGTGCTGTGTCAAGTGTTCAATGAGTTCAACTCGAGGAAGATGGAGAAGATGAATGTTTTTGAAGGTATTTTGGGGAATAAGTTGTTTATAGGGATTGTAGGGGGGACGATTGTTCTTCAGGCAGTCATGGTGGAGTTCTTAAAGAATTTTGCAAATACGGAGAGGTTGAATTGGTGGCAGTGGGGAGTTTGTGTTGCTTTTGCAGGTCTTTCTTGGCCGATTGGTTGGGTTGTTAAGCTTGTGCCGGTATCGAAAAAACCGTATTTTTTTTACCTTAAGGAGCAGAAAGCCTTGTTTGTTAAGATTATATTATAG 3270 43.46 MSTLLVLNTTKAQRRWRFAYAAIYSFRAMLSLSKEFISKQNDYIEYGFFHDFEPFSSSSHSIHQTADDQIEDVQAQNMAQKRWRVVFLTIRFVRAMVSLSQMMVAEKEKFVDSKPKEDDSYILTTTVTDIGVNIDQKKLGEIVKDKDLIALHGIGHVLGVADSLGTNPESGIRDDDDVSKRREMFGSNTYKRKPLKGFFHFVLEAFKDPTIIILLICAGLSLGFGIKEEGAKEGWYEGGSIFVAVFLVVVVSAISNFRQETQFEKLSKIGNNIKVKVLRNGREIEISIFDIVVGDVVFLNLGDQIPADGLFLHGHSLQVDESSMTGESDHVEVNYKHRPFLFSGSKVVDGYARMLVTSVGMDTAWGELMSSVSGDSTEQTPLQVRLNKLTSTIGKVGLLVAFLVLLVLLIRYFTGNTEDKNGMREYNGSKTNINSVFNAIIRIVSNAVTIVVVAIPEGLPLAVTLTLAYSMKRMMGDNAMVRKLSACETMGSATVICTDKTGTLTLNQMQVTKFWLGLEIFGKDSPVQIRPDVLELIYQVVGLNTTGSVYKPLSASSKPEVSGSPTEKAILSWAVSELGMDMEKLKKSYTLVHVETFNSEKKRSGVAIRKKSSANNNILIHWKGAAEIILEMCTNYCEINGTIKPLDDKDARTRYEKIIQAMAASSLRCIAFAYKQIHEEEMEYKDHDKTSPRLKEDGLTFLGIIGIKDPCRPGVKAAVKTCKAAGVLIKMITGDNIFTAKAIATECGILDPDMKLKTEEVIIEGSEFRNFTHEERMQKVDNILVMARSSPFDKLLMVQCLKRKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSAGKVPLTAVQLLWVNLIMDTLGALALATEKPTDELMMKPPVGRTEPLITNIMWRNLLAQALYQISVLLTFEFRGESIFNVSEAVKDTLIFNTFVLCQVFNEFNSRKMEKMNVFEGILGNKLFIGIVGGTIVLQAVMVEFLKNFANTERLNWWQWGVCVAFAGLSWPIGWVVKLVPVSKKPYFFYLKEQKALFVKIIL 1089
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
17 3019882 3023752 - Conep17aG0059700.1 Cone17ag0579 456056
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0579 1089 FunFam Calcium-transporting ATPase 249 373 - -
Cone17ag0579 1089 PRINTS Sodium/potassium-transporting ATPase signature 620 638 - -
Cone17ag0579 1089 PRINTS Sodium/potassium-transporting ATPase signature 490 511 - -
Cone17ag0579 1089 NCBIfam HAD-IC family P-type ATPase 241 414 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone17ag0579 1089 NCBIfam HAD-IC family P-type ATPase 785 892 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone17ag0579 1089 NCBIfam HAD-IC family P-type ATPase 438 517 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone17ag0579 1089 SUPERFAMILY HAD-like 495 916 IPR036412 -
Cone17ag0579 1089 ProSitePatterns E1-E2 ATPases phosphorylation site. 499 505 IPR018303 -
Cone17ag0579 1089 SFLD p-type atpase 479 864 IPR044492 -
Cone17ag0579 1089 Pfam E1-E2 ATPase 274 475 - -
Cone17ag0579 1089 SUPERFAMILY Calcium ATPase, transmembrane domain M 159 1070 IPR023298 -
Cone17ag0579 1089 Gene3D - 494 856 IPR023214 -
Cone17ag0579 1089 FunFam Calcium-transporting ATPase 828 1070 - -
Cone17ag0579 1089 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 504 707 IPR023299 GO:0000166(InterPro)
Cone17ag0579 1089 FunFam Calcium-transporting ATPase 204 261 - -
Cone17ag0579 1089 SFLD Haloacid Dehalogenase 479 864 - -
Cone17ag0579 1089 PRINTS P-type cation-transporting ATPase superfamily signature 725 735 - -
Cone17ag0579 1089 PRINTS P-type cation-transporting ATPase superfamily signature 835 847 - -
Cone17ag0579 1089 PRINTS P-type cation-transporting ATPase superfamily signature 320 334 - -
Cone17ag0579 1089 PRINTS P-type cation-transporting ATPase superfamily signature 703 714 - -
Cone17ag0579 1089 PRINTS P-type cation-transporting ATPase superfamily signature 811 830 - -
Cone17ag0579 1089 PRINTS P-type cation-transporting ATPase superfamily signature 497 511 - -
Cone17ag0579 1089 NCBIfam calcium-translocating P-type ATPase, PMCA-type 150 1068 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Cone17ag0579 1089 Pfam Cation transporting ATPase, C-terminus 896 1066 IPR006068 -
Cone17ag0579 1089 CDD P-type_ATPase_Ca_PMCA-like 178 944 - -
Cone17ag0579 1089 Pfam Cation transporter/ATPase, N-terminus 159 221 IPR004014 -
Cone17ag0579 1089 SUPERFAMILY Calcium ATPase, transduction domain A 272 372 IPR008250 -
Cone17ag0579 1089 Gene3D - 204 1060 - -
Cone17ag0579 1089 FunFam Calcium-transporting ATPase 507 710 - -
Cone17ag0579 1089 SMART Cation_ATPase_N_a_2 153 226 IPR004014 -
Cone17ag0579 1089 PANTHER CATION TRANSPORTING ATPASE 115 1069 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Cone17ag0579 1089 Pfam haloacid dehalogenase-like hydrolase 495 825 - -
Cone17ag0579 1089 Gene3D - 507 710 IPR023299 GO:0000166(InterPro)
Cone17ag0579 1089 Gene3D - 175 373 - -
Cone17ag0579 1089 FunFam Calcium-transporting ATPase 705 856 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0579 Cone-Chr17:3019882 Cone7ag0285 Cone-Chr7:1209868 0 dispersed
Cone10ag0678 Cone-Chr10:3288120 Cone17ag0579 Cone-Chr17:3019882 0 wgd
Cone17ag0579 Cone-Chr17:3019882 Cone20ag0829 Cone-Chr20:5887976 0 wgd
Cone17ag0579 Cone-Chr17:3019882 Cone3ag0703 Cone-Chr3:3598745 2.49E-111 wgd
Cone17ag0579 Cone-Chr17:3019882 Cone4ag0278 Cone-Chr4:1262302 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0579 K01537 - vvi:100259561 1396.33