Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0586 ATGGCTAACAATCCTTCCGATACTCCAGCCGACGATTTCCTTGAGCAAATTCTCGGAATTACTCCTTTCGCTTCAGCTGACCCTGGCTTGGGCGGAGCCGACGGCAGCTTGGCTGGAACGGCGGCTTCTGTTCATGCTCCGATGATGCTACAGCTCAGCTCAGGTGACGGCTCCGGTCATATGGCCTCCATCGGCGGTGGAGTCAGCGGTGGATATCATGGAACGGCTTTTCCCTTAGGCCTAAGCTTGGAGCAAGGAAATAGTGGCTTTCTGAAACCTGAGGAGGCTTCCGGTAGTGGCAGGGGCTCATCTGTGAAAACTATTTTTCATGGCCAGCCGATGTCAAATACTGTCAACGCAGCTCCTCATCCACCAGCAATGCGCCCAAGGGTACGGGCTAGACGAGGACAGGCAACAGATCCACACAGCATTGCTGAGAGGTTGCGCAGAGAAAGAATTGCAGAGAGAATTAGGGCCTTACAGGAACTAGTTCCAAGTGTTAATAAGACGGACAGAGCTGCAATGCTTGATGAGATTGTGGATTATGTGAAGTTCCTGCGCCTCCAAGTAAAGGTTCTGAGCATGAGTAGATTGGGCGGAGCCGGTGCAGTGGCTCCACTTGTAACAGATATTCCACTATCATCAGTTGAGGAAGAGGGAAGTGAAGGAGGAAGAAATCAACCGGCATGGGAAAAATGGTCAAACGACGGCACGGAAAAGCAAGTAGCTAAGCTAATGGAAGAAAACGTTGGTGCTGCTATGCAGTTTCTTCAATCGAAGGCTCTTTGTATCATGCCCATCTCCCTAGCCTCTGCAATTTACCATACACAAACACAGGACCCTTCTAGTGGGGTCAAGCCAGAGACTAACCCGCCTTCATAA 882 50.79 MANNPSDTPADDFLEQILGITPFASADPGLGGADGSLAGTAASVHAPMMLQLSSGDGSGHMASIGGGVSGGYHGTAFPLGLSLEQGNSGFLKPEEASGSGRGSSVKTIFHGQPMSNTVNAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQTQDPSSGVKPETNPPS 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3085417 3090604 + Conep17aG0060400.1 Cone17ag0586 456063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0586 293 FunFam Basic helix-loop-helix transcription factor 132 194 - -
Cone17ag0586 293 Gene3D - 132 194 IPR036638 GO:0046983(InterPro)
Cone17ag0586 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983(InterPro)
Cone17ag0586 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 272 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone17ag0586 293 MobiDBLite consensus disorder prediction 114 141 - -
Cone17ag0586 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 196 IPR036638 GO:0046983(InterPro)
Cone17ag0586 293 Pfam Helix-loop-helix DNA-binding domain 142 187 IPR011598 GO:0046983(InterPro)
Cone17ag0586 293 SMART finulus 143 192 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0586 Cone-Chr17:3085417 Cone5ag0543 Cone-Chr5:2302543 5.85E-83 dispersed
Cone10ag0673 Cone-Chr10:3253192 Cone17ag0586 Cone-Chr17:3085417 4.58E-86 wgd
Cone17ag0586 Cone-Chr17:3085417 Cone20ag0823 Cone-Chr20:5833869 2.28E-190 wgd
Cone17ag0586 Cone-Chr17:3085417 Cone3ag0699 Cone-Chr3:3570636 1.37E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45041 PF03242 LEA_3 4.30E-30 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0586 - - - 0.0