Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0596 ATGGAAGACGTAGAGGAAGCTAACAAAGCTGCAGTTACAAGTTGTCTTAGAGTTCTAAGTCTTATTTTAGCTCGACCCAAAGAAGATCAACAGCAAGTTGAGTATTATAAAAATTTAGGGATTGAAACTAATGAAGCTGTGTTCAAATTCAAGAGAGTTGTTTCTCGTCTCAATTCTGATCATCTATGCAATCGTGCAAGATTTAGAAAAAGGGTTAGGAATTTTCATTTCCCTTTTCCCCAAACAATCCTTCTAGACCCTCAAATCAAAACCCATAACCGCTTGAACTTAAACCCTTCACTCTGCTTAGCAAACCCGTCTTTGGAGTTGAGCTCAAATGGGAAGATCAGCCCTCTTCAATTATCCCTACAAGCCCAGCCGTCTTTTTTGCCCCACCCTCATAATTTGGTTCAGCAGAATATGAGTAATAATAATTGTACAAGGCCTGAAAAGATGATGTTTAGAAGGAGTAATAGTGGCATAAGCCTTAACTTTGATAGCTCTAGTTGCATTCCAACAATGTCATCTACTAGATCATTCATATCTTCTCTAAGCATAGACGGGAGTGTCGCAAACAATTTTGATGGAAATTCCTTTCATTTGATCGGGGCACCCCCTCGAGCCTCGGATCAGAATTCTCAACATAAAAGGAAATGTAGAGGAGATGATGGGAGTGTGAAATGTGGAAGCAGTAGTAGATGTCATTGCTCGAAAAAGAGGAAACATAGGGTGAAAAGATCGATTAAGGTACCTGCTATTAGTAACAAACTTGCGGATATACCACCTGATGATTATTCATGGAGGAAATATGGACAGAAGCCAATCAAGGGTTCTCCTCATCCTAGGGGATATTACAAGTGTAGTAGCATGAGGGGCTGCCCAGCAAGAAAGCATGTAGAGAGGTGCTTAGAAGATCCTTCTATGCTAATCATTACATATGAAGGAGAGCATAACCATGCTAGGATACCTTCTCAATCTGCAAACACATGA 990 40.2 MEDVEEANKAAVTSCLRVLSLILARPKEDQQQVEYYKNLGIETNEAVFKFKRVVSRLNSDHLCNRARFRKRVRNFHFPFPQTILLDPQIKTHNRLNLNPSLCLANPSLELSSNGKISPLQLSLQAQPSFLPHPHNLVQQNMSNNNCTRPEKMMFRRSNSGISLNFDSSSCIPTMSSTRSFISSLSIDGSVANNFDGNSFHLIGAPPRASDQNSQHKRKCRGDDGSVKCGSSSRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIITYEGEHNHARIPSQSANT 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3167378 3170153 + Conep17aG0061400.1 Cone17ag0596 456073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0596 329 SMART WRKY_cls 261 321 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag0596 329 Pfam WRKY DNA -binding domain 263 319 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag0596 329 SUPERFAMILY WRKY DNA-binding domain 259 320 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag0596 329 Pfam Plant zinc cluster domain 216 259 IPR018872 -
Cone17ag0596 329 ProSiteProfiles WRKY domain profile. 256 322 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag0596 329 Gene3D WRKY domain 246 322 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag0596 329 MobiDBLite consensus disorder prediction 204 224 - -
Cone17ag0596 329 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 325 IPR044810 GO:0003700(InterPro)
Cone17ag0596 329 FunFam WRKY transcription factor 65 245 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0596 Cone-Chr17:3167378 Cone6ag1414 Cone-Chr6:11365253 1.71E-56 dispersed
Cone17ag0596 Cone-Chr17:3167378 Cone20ag0815 Cone-Chr20:5790000 7.65E-223 wgd
Cone17ag0596 Cone-Chr17:3167378 Cone4ag1113 Cone-Chr4:9616935 4.64E-117 wgd
Cone17ag0596 Cone-Chr17:3167378 Cone7ag1018 Cone-Chr7:7867537 3.56E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45042 PF12166 Piezo_RRas_bdg 3.00E-108 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0596 - - - 0.0