Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone17ag0604 | ATGAACATTATTGTTGGTTCTCATGTTTGGGTTGGTGACCCAGAATTAGTTTGGGTTGATGGACTTGTACAAAATATCACTGGAGATGATGCTGAGATAGAAGCCAGTAATGGGAAGACGGTAGTTGCAAATTTGTCAAATATATATCCAAAGGATGTTGAAGCTCCTGATGGTGGGGTTGATGACATGACTAAGCTATCATATTTGCATGAGCCGGGAGTGCTATATAACTTGGCCACTAGATACGAGGCCAATGAAATTTATACATATACTGGGAACATTCTTATTGCTATTAATCCTTTCCAAAGGCTTCCACAATTGTATGAGTCTCATGTAATGGAAAAGTACAAGGGAGCACCCTTTGGAGAACTAAGCCCTCATGTTTTTGCAGTAGCTGATGTTGCATATCGGGCGATGGTTAATGATGGGAAGAGCAACTCTATACTCGTTAGTGGTGAAAGTGGGTCCGGTAAAACTGAAACCACCAAAATGCTTATGCGATACCTTGCCTTTTTAGGTGGCCATGCTGCAGTTGAAGGAAGAACTGTTGAACAACAAGTTTTAGAATCAAATCCAGTTCTTGAAGCATTTGGCAATGCAAAAACAGTTAGAAATAACAATTCGAGCCGATTTGGAAAATTTGTTGAAATTCAATTTGACAAAAAAGGAAGAATATCAGGGGCTGCTATCAGAACTTATCTTCTAGAGAAATCTCGTGTTTGCCAAATTTCAGAGCTTGAGCGAAATTATCATTGTTTTTACCTTCTGTGTGCAGCTCCACCTCAGGATAGACAGAGATTTAAGTTGGGAGATCCAAAATCATTTCATTATCTAAACCAATCAAATTGTTATGAATTGGTTGGCGTGAATGATGCTCATGATTATCTTTCCTTGAAGAGAGCAATGGATATTGTCGGAATAGGTGAAAAAGAACAGGATGCAATTTTCAGAGTTGTTGCTGCGATTCTTCATCTTGGCAATATTGATTTTTCAAAGGGAGACGAGATTGATTCATCAGTTTTAAAAAATGAAGAATCAAAATTCCATCTTCAAATGACAGCGGAGTTGCTCATGTGTGATCCTAACGCATTAGAAGATGCCCTATGTAAACGTGTAATGGTTACTCCTGAAGAAATTATCAAGAGAAGTCTTGATTCTCATGGTGCAACAGTAAGCCGTGATGGTTTAGCCAAGACAATATATTCTCGTTTGTTTGACTGGTTGGTGGATAAAATTAATGTTTCTATCGGACAAGATCCTACCTCAAAATCTCTGATTGGGGTTCTTGACATTTATGGCTTTGAAAGTTTTAAAACTAATAGTTTTGAGCAATTCTGTATAAATTTCACAAATGAAAAACTGCAACAGCATTTCAACCAGCATGTTTTCAAGGTGGAGCAAGAAGAATACACAAAAGAGGATATTAATTGGAGCTATATAGAATTTATTGATAACCAGGATGTCCTAGATCTCATCGAGAAGAAACCTGGTGGGATAATTGCTCTTCTGGATGAAGCTTGCATGTTTCCGAGGTCGACTCATGAAACATTTTCGCAAAAGCTATATCAGACATTCAAGAGTCACAAACGCTTCATCAAGCCAAAATTGACTCGTTCAGATTTTACCATTGTTCATTATGCCGGAGATGTTCAGTATCAATCTGATCAATTCTTAGACAAAAACAAAGATTACATTGTTCCTGAACATCAAGATTTGTTGAGTACTTCAAAATGTCCTTTTGTAGCATGCCTTTTCCCTACACTAACTGAGGAGGCAACTAAATCATCAAAATTTTCTTCAATTGGTTTTCGTTTTAAGCTTCAACTGCAGCATTTGATGGAAACTCTAAACTCTACAGAACCCCATTACATTAGATGCGTGAAGCCAAATACCGCTCTAAATCCTGCCATATTTGAGAATGATAATGTCATGCAACAACTACGTTCTGGTGGTGTTCTGGAGGCAATCAGAATCAAATGTAACGGATATCCTACTCACAGGAATTTCTATGAATTTTTGAATCGATTTGGAATCCTTGCACCAGAGGTATCGGTCCTACTGGAAAATAATGAAGAAAAACTTGCTTGTGAGAGAATTCTACAGAAAATGGGAATTAAAGGGTATCAGATAGGGAAATCAAAGGTTTTCTTAAGAGCTGGTCAGATGGCTGAGTTAGATGCAAGAAGAGCAGGAAAACTTGGAGGCTCAGTCAAAATGATTCAAAAGCAGATTCGAAGTTGTCTTCTTCGTAAAAAGTTTGTTTCTATGAAGAAGGCTTCTATGCTTATACAATCTCGTTGGAAAGGTATTCTTACTCGTGAGTCATATAAGATCATGAGAAGGGAAGTGGCTTCAGTGAAAATTCAGAAGCATATGCGAAGACACCTTCACAGAAAGTCCTATCGCCAAATTTTGGTCTGCGTGGTTGTCTTTCAGACAGGTATACGGGCAGTGGCTGCTCGTAATGAATTTAGTCGTAAAAGGCAATCTAGGGCAGCGGCTAAAATTCAAGCAGATTTTCGTCGTCATAAAGCGCTTTCGGATTATAAGAAGCTTAAACAAACAACAATTATTTCACAATCCAAATCCGTGGAAGGAACTGCAGGTGTAGAGATTGGGAAACAGAAGATAGAGACCGACTTCGGGAAAAAGGAAGATACAATGGCCCTGTCAACTTCATTATATCATGTGCCAAGTGACGGCGAGGAACTGGTTGAGTTAATTGTGAAGGAAATTCAGACTTTTCATAAAGCAACTGAAGAAGCATGCTTTATTGTCAAAGAGCCTTCAAGCCCCGTCAAAGATCCTAAAAAGATTGAGACTCTCATGGCGGAAGTGACCAATTTGAAGACATTGCTTAAGGAAGAAAAGCAAAGAGCTGATGCTTGCGAAAGGAAATATGCTGAGGCCCTGGCATTGAGCGAGGAAAGACGGAGAAAGCTAGAAGAAACAGAAAGAAGGGTTCAACAGCTTCAAGACTCCATTACCAGGATGATATATTGCATGTCAAACCAAATATCAGAGCTGAAAATGATCATGCATACTTCTTCCAACTCAAGTGCTACTACTTCTGGATCCATTACTACTAAGGATGTTCTGGTTGATGCCACTTGTAACTCTGACTCTTCGTCAACTGACTCTGATTTCACTTTCCCAGCTCCTACTCCATCTACATCGACTTTCTCTTCCTTTAAACCCAATACCTTGCAGCTCATTGTCCAAGATATTTCTGCTGCGGATGTCTCAGGACCTGAAAATGACAAGGAAGGAGCTTTTGATGACTTCTTCTAA | 3291 | 38.99 | MNIIVGSHVWVGDPELVWVDGLVQNITGDDAEIEASNGKTVVANLSNIYPKDVEAPDGGVDDMTKLSYLHEPGVLYNLATRYEANEIYTYTGNILIAINPFQRLPQLYESHVMEKYKGAPFGELSPHVFAVADVAYRAMVNDGKSNSILVSGESGSGKTETTKMLMRYLAFLGGHAAVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKKGRISGAAIRTYLLEKSRVCQISELERNYHCFYLLCAAPPQDRQRFKLGDPKSFHYLNQSNCYELVGVNDAHDYLSLKRAMDIVGIGEKEQDAIFRVVAAILHLGNIDFSKGDEIDSSVLKNEESKFHLQMTAELLMCDPNALEDALCKRVMVTPEEIIKRSLDSHGATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPTSKSLIGVLDIYGFESFKTNSFEQFCINFTNEKLQQHFNQHVFKVEQEEYTKEDINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFSQKLYQTFKSHKRFIKPKLTRSDFTIVHYAGDVQYQSDQFLDKNKDYIVPEHQDLLSTSKCPFVACLFPTLTEEATKSSKFSSIGFRFKLQLQHLMETLNSTEPHYIRCVKPNTALNPAIFENDNVMQQLRSGGVLEAIRIKCNGYPTHRNFYEFLNRFGILAPEVSVLLENNEEKLACERILQKMGIKGYQIGKSKVFLRAGQMAELDARRAGKLGGSVKMIQKQIRSCLLRKKFVSMKKASMLIQSRWKGILTRESYKIMRREVASVKIQKHMRRHLHRKSYRQILVCVVVFQTGIRAVAARNEFSRKRQSRAAAKIQADFRRHKALSDYKKLKQTTIISQSKSVEGTAGVEIGKQKIETDFGKKEDTMALSTSLYHVPSDGEELVELIVKEIQTFHKATEEACFIVKEPSSPVKDPKKIETLMAEVTNLKTLLKEEKQRADACERKYAEALALSEERRRKLEETERRVQQLQDSITRMIYCMSNQISELKMIMHTSSNSSATTSGSITTKDVLVDATCNSDSSSTDSDFTFPAPTPSTSTFSSFKPNTLQLIVQDISAADVSGPENDKEGAFDDFF | 1096 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 3262558 | 3270831 | + | Conep17aG0062200.1 | Cone17ag0604 | 456081 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone17ag0604 | 1096 | ProSiteProfiles | IQ motif profile. | 829 | 856 | - | - | |
| Cone17ag0604 | 1096 | Gene3D | Kinesin motor domain | 61 | 658 | IPR036961 | - | |
| Cone17ag0604 | 1096 | ProSiteProfiles | IQ motif profile. | 781 | 805 | - | - | |
| Cone17ag0604 | 1096 | SMART | MYSc_2a | 52 | 731 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone17ag0604 | 1096 | CDD | MYSc_Myo11 | 72 | 718 | IPR036018 | - | |
| Cone17ag0604 | 1096 | Gene3D | - | 663 | 728 | - | - | |
| Cone17ag0604 | 1096 | Pfam | Myosin head (motor domain) | 60 | 718 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone17ag0604 | 1096 | Coils | Coil | 939 | 994 | - | - | |
| Cone17ag0604 | 1096 | Gene3D | - | 248 | 306 | - | - | |
| Cone17ag0604 | 1096 | SMART | iq_5 | 732 | 754 | IPR000048 | GO:0005515(InterPro) | |
| Cone17ag0604 | 1096 | SMART | iq_5 | 755 | 777 | IPR000048 | GO:0005515(InterPro) | |
| Cone17ag0604 | 1096 | SMART | iq_5 | 803 | 825 | IPR000048 | GO:0005515(InterPro) | |
| Cone17ag0604 | 1096 | SMART | iq_5 | 780 | 802 | IPR000048 | GO:0005515(InterPro) | |
| Cone17ag0604 | 1096 | SMART | iq_5 | 828 | 850 | IPR000048 | GO:0005515(InterPro) | |
| Cone17ag0604 | 1096 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 308 | 597 | - | - | |
| Cone17ag0604 | 1096 | Pfam | Myosin N-terminal SH3-like domain | 5 | 47 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone17ag0604 | 1096 | FunFam | Myosin 2 | 308 | 424 | - | - | |
| Cone17ag0604 | 1096 | PRINTS | Myosin heavy chain signature | 145 | 170 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone17ag0604 | 1096 | PRINTS | Myosin heavy chain signature | 88 | 107 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone17ag0604 | 1096 | PRINTS | Myosin heavy chain signature | 192 | 219 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone17ag0604 | 1096 | PRINTS | Myosin heavy chain signature | 425 | 453 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone17ag0604 | 1096 | PRINTS | Myosin heavy chain signature | 478 | 506 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone17ag0604 | 1096 | FunFam | Myosin heavy chain | 248 | 303 | - | - | |
| Cone17ag0604 | 1096 | ProSiteProfiles | IQ motif profile. | 756 | 785 | - | - | |
| Cone17ag0604 | 1096 | Gene3D | - | 435 | 619 | - | - | |
| Cone17ag0604 | 1096 | Pfam | IQ calmodulin-binding motif | 758 | 777 | IPR000048 | GO:0005515(InterPro) | |
| Cone17ag0604 | 1096 | Pfam | IQ calmodulin-binding motif | 784 | 802 | IPR000048 | GO:0005515(InterPro) | |
| Cone17ag0604 | 1096 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 33 | 783 | IPR027417 | - | |
| Cone17ag0604 | 1096 | Gene3D | - | 784 | 834 | - | - | |
| Cone17ag0604 | 1096 | Gene3D | - | 732 | 783 | - | - | |
| Cone17ag0604 | 1096 | FunFam | Class V myosin | 435 | 575 | - | - | |
| Cone17ag0604 | 1096 | ProSiteProfiles | Myosin motor domain profile. | 58 | 730 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone17ag0604 | 1096 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 4 | 53 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone17ag0604 | 1096 | PANTHER | MYOSIN | 8 | 1023 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag0604 | Cone-Chr17:3262558 | Cone4ag0805 | Cone-Chr4:5072247 | 0 | dispersed | |
| Cone10ag0655 | Cone-Chr10:3164573 | Cone17ag0604 | Cone-Chr17:3262558 | 0 | wgd | |
| Cone17ag0604 | Cone-Chr17:3262558 | Cone3ag0684 | Cone-Chr3:3484010 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone17ag0604 | K10357 | - | csv:101220626 | 1513.05 |