Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone17ag0641 | ATGGGTGAGTCCGAAGCTGAAAGAATCCGAAACATATGTATACTTGCACATGTCGATCATGGAAAAACCACCCTAGCTGACCACCTCATAGCTGCCTCAAGTGGCGGCTTACTCCACCCAAAGCTGGCAGGAAAACTTCGTTTCATGGACTATCTAGACGAGGAGCAGAGGCGTGCCATTACAATGAAGAGCTCTTCTATTGCACTTCACTATAAGAATCATTCTATAAACCTCATAGACTCTCCTGGACACATGGATTTTTGTAGCGAGGTATCTACTGCAGCAAGGCTTAGCGATGGAGCATTGGTATTGGTCGATGCAGTTGAGGGGGTCCACATTCAGACCCATGCAGTTTTACGACAAGCTTGGATTGAGAAACTCACCCCTTGCTTGGTGCTTAATAAGATTGATAGGTTGATTTGTGAATTGAAGTTAAGCCCCATGGAAGCTTACACGAGGTTGTTAAAGATTGTCCATGAGGTTAATGGGATTGTGAGTGGGTATAAATCGGAGAAGTATTTGTCTGATGTAGATTTAATTCTTGCTGGAAATTTTTCAGGCGAGGTAACCGGTGAGAATCTTGAAAATATAGAGGACGATGAAGAAGACACTTTTCAACCACAAAAGGGTAATGTAGCATTTGTTTGCGCATTAGATGGGTGGGGGTTTAGTATCAACGAGTTTGCTGAGTTTTATGCTTCCAAACTTGGGGCAAGTGTGACTGCACTGAAGAAGGCATTGTGGGGCCCACAGTATTTTAATTCAAAGGCTAAGATGATTGTGGGCAAGAAGGGGTTAACGGTTAGTGGAAGTAAGGCTCGGCCGATGTTTGTGCAGTTTGTTCTTGAACCAATTTGGGAGGTTTATAAGGCAGCCTTAGAACCAGACGGGGATAAAGAAGTGCTTCAGAAAGTTGACAAGGCATTTAGTTTGAAAATTCCTGCCCGTGAGCTTTCTAACAAGGATCCTAAGGTTGTGCTTCAAGCTGTTATGAGCCGTTGGCTGCGTTTGTCTGATGCTGTCTTGTCTATGGTGGTAAGATCTATGCCAGATCCTGTTACTGCCCAATCTTTTCGTGTATCACGTTTGATTCCAAAGAGAGATTTTTCGGACCATGAAGAAGTAGAGCTTGTGAGGAAATCTGTTGAGGCTTGTGATTCTAGGGTTGAAGCTCCTTGTGTATGTTTTGTCTCCAAGATGTTTGCTGTCCCTATGAAAATGCTTCCTAATAGGGGGGGCTTTAATGGTGGAATGAGTGAAGGTGGGGAAAGTGAATCAGATGAGTGTTTCCTTGCATTTGCAAGGATCTTTAGTGGTGTTCTTTATTCTGGGCAGAAAGTCTTTGTTCTTTCTGCTTTATATGACCCATTAAATTGTGGGGAGTCAATGCAGAAACATGTTCAGGAAGCCGAAGTGGAGGCTTTGTATCTAATGATGGGCCAAGGATTAGAACCAGTAAGATCGGTTAAAGCAGGGAATGTTGTTGCAATACGTGGGCTTGGTCAGCATATTTTAAAAAGTGCAACTCTTTCATCTACTAGGAGCTGTTTGCCTTTCTCGAGCATGGTATTTCAGGTTTCCCCGACTTTAAGAGTTGCAGTTGAGCCATCTGATCCAGCTGAAATGGGCCCATTCTTGAAAGGCTTGAGGCTTCTGAATCGGGCCGACCCATTTGTAGAGGTCACTGTTTCTGCAAGGGGAGAGCATGTGTTAGCTGCAGCTGGAGAAGTTCATCTTGAGAGGTGCATAAAGGATCTGAAGGAGAGATTTGCTAAGGTTAGCTTGGAAGTGTCTCCGCCACTTGTATCTTATAGAGAGACTATCAAGGGAGAAGGGGCTAATAATATGGTAGATTATGCAAAGTTTTTGAGTGGGAGCTTGGATTATGTGGAGAAGACAACAGCAAATGGAAGATGTCTTGTCCGGGTGCATGTGATGAAGCTTCCTCCTGATTTAACTAAGGTGCTTGATGAAAATTCCCATTTACTTGGAGATATTATTGGCGGTAAGACAGGGCAACAGGGTAAAAGTTTGGTTGATAAGATGTCAAGTGTTGTGGAAATTGAAAACCCAGTTGAGACAATGAAAAGGCGGATAATGGATGTATTGGGTATAGACATTCCGCCCATAAACAATAATGATGGGGACAAGATAGATAAGAATAAGGAAATGTGGTTAAAGCTTCTAAGGCGGATTTGGGCCCTTGGCCCGGGACAGATTGGCCCGAATATCCTTTTCACCCCAGACCTTAAAGGAAAAGATTCTGAAATCTCTAAAAGACTTATTCATGGCTCCCCTTACGTATCTAAAAGATTCGGATTTATGGATGCTTCATCTTTAGAGAGTGATTCTTTGGCTGGTGAAATTTCATACGAACAAACTCAAGCATTAGAGCGTTTACAGAGCTGTATAGTCTCTGGATTTCAGTTAGCTACATCAGCAGGGCCCTTATGTGAAGAACCCATGTGGGGCCTAGCATTTGTTGTCGAGGCTTTCATTGACGATGAAGAATCTTCCACAATCTCCCAACAACCTGAGCAATATGGAATCTTTACGGGTCAGGTCATGACTGCTGTCAAAGAAGCAAGTAGGGCAGCAATCCTTCAGAAGAGACCACAGTTAGTTGAAGCTATGTACTTTTGTGAGCTGAATACGCCTGCTGAACATCTGGCCTCCATGTATGCTGTACTTAATCGTAGGCGGGCCCAGGTCCTCAAGGATGAAATGCAGGAAGGCTCGCCTTTGTTCACTGTACATGCTTATTTACCAGTTTCAGAGAGCTTTGGTTTTGCAGATGAGCTAAGGAGAGGGACTTCTGGTGCAGCCAGTGCTCTTCTTGTGCTTAGCCATTGGGAAGCATTAGAAGAAGATCCTTTCTTTGTGCCTAAAACAGAAGAGGAGATTGAAGAATTTGGGGATGGTTCTAGTGTGCCGCCTAATACAGCAAGAAAACTTATTGACACGGTAAGAAGGCGAAAGGGCCTTCCTGTTGTAGAAAAAGTAGTCCAACATGCCACCAAACAAAGGACGCTGGCTCGGAAAGTCTAA | 3048 | 43.8 | MGESEAERIRNICILAHVDHGKTTLADHLIAASSGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKNHSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLICELKLSPMEAYTRLLKIVHEVNGIVSGYKSEKYLSDVDLILAGNFSGEVTGENLENIEDDEEDTFQPQKGNVAFVCALDGWGFSINEFAEFYASKLGASVTALKKALWGPQYFNSKAKMIVGKKGLTVSGSKARPMFVQFVLEPIWEVYKAALEPDGDKEVLQKVDKAFSLKIPARELSNKDPKVVLQAVMSRWLRLSDAVLSMVVRSMPDPVTAQSFRVSRLIPKRDFSDHEEVELVRKSVEACDSRVEAPCVCFVSKMFAVPMKMLPNRGGFNGGMSEGGESESDECFLAFARIFSGVLYSGQKVFVLSALYDPLNCGESMQKHVQEAEVEALYLMMGQGLEPVRSVKAGNVVAIRGLGQHILKSATLSSTRSCLPFSSMVFQVSPTLRVAVEPSDPAEMGPFLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYRETIKGEGANNMVDYAKFLSGSLDYVEKTTANGRCLVRVHVMKLPPDLTKVLDENSHLLGDIIGGKTGQQGKSLVDKMSSVVEIENPVETMKRRIMDVLGIDIPPINNNDGDKIDKNKEMWLKLLRRIWALGPGQIGPNILFTPDLKGKDSEISKRLIHGSPYVSKRFGFMDASSLESDSLAGEISYEQTQALERLQSCIVSGFQLATSAGPLCEEPMWGLAFVVEAFIDDEESSTISQQPEQYGIFTGQVMTAVKEASRAAILQKRPQLVEAMYFCELNTPAEHLASMYAVLNRRRAQVLKDEMQEGSPLFTVHAYLPVSESFGFADELRRGTSGAASALLVLSHWEALEEDPFFVPKTEEEIEEFGDGSSVPPNTARKLIDTVRRRKGLPVVEKVVQHATKQRTLARKV | 1015 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 3709823 | 3716476 | + | Conep17aG0065900.1 | Cone17ag0641 | 456118 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone17ag0641 | 1015 | CDD | EF2 | 10 | 233 | - | - | |
| Cone17ag0641 | 1015 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 526 | 603 | - | - | |
| Cone17ag0641 | 1015 | Pfam | Elongation factor G C-terminus | 874 | 958 | IPR000640 | - | |
| Cone17ag0641 | 1015 | FunFam | Elongation factor like GTPase 1 | 225 | 335 | - | - | |
| Cone17ag0641 | 1015 | SUPERFAMILY | Translation proteins | 383 | 522 | IPR009000 | - | |
| Cone17ag0641 | 1015 | PRINTS | GTP-binding elongation factor signature | 57 | 65 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cone17ag0641 | 1015 | PRINTS | GTP-binding elongation factor signature | 129 | 138 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cone17ag0641 | 1015 | PRINTS | GTP-binding elongation factor signature | 77 | 87 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cone17ag0641 | 1015 | PRINTS | GTP-binding elongation factor signature | 11 | 24 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cone17ag0641 | 1015 | PRINTS | GTP-binding elongation factor signature | 93 | 104 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cone17ag0641 | 1015 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 6 | 350 | IPR027417 | - | |
| Cone17ag0641 | 1015 | Gene3D | - | 872 | 1007 | - | - | |
| Cone17ag0641 | 1015 | CDD | aeEF2_snRNP_like_IV | 599 | 880 | - | - | |
| Cone17ag0641 | 1015 | FunFam | Translation elongation factor 2 | 527 | 603 | - | - | |
| Cone17ag0641 | 1015 | CDD | EF2_II | 392 | 513 | - | - | |
| Cone17ag0641 | 1015 | SMART | EFG_C_a | 873 | 962 | IPR000640 | - | |
| Cone17ag0641 | 1015 | Gene3D | - | 626 | 870 | IPR014721 | - | |
| Cone17ag0641 | 1015 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 6 | 1012 | - | GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0042256(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER) | |
| Cone17ag0641 | 1015 | Gene3D | Translation factors | 352 | 525 | - | - | |
| Cone17ag0641 | 1015 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 602 | 874 | IPR020568 | - | |
| Cone17ag0641 | 1015 | SUPERFAMILY | EF-G C-terminal domain-like | 525 | 600 | IPR035647 | - | |
| Cone17ag0641 | 1015 | Gene3D | Yeast translation eEF2 (G' domain) | 225 | 335 | - | - | |
| Cone17ag0641 | 1015 | FunFam | Elongation factor like GTPase 1 | 872 | 1007 | - | - | |
| Cone17ag0641 | 1015 | CDD | EF2_snRNP_III | 528 | 599 | - | - | |
| Cone17ag0641 | 1015 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 7 | 240 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cone17ag0641 | 1015 | SUPERFAMILY | EF-G C-terminal domain-like | 876 | 973 | IPR035647 | - | |
| Cone17ag0641 | 1015 | CDD | eEF2_snRNP_like_C | 876 | 955 | - | - | |
| Cone17ag0641 | 1015 | Gene3D | - | 2 | 214 | IPR027417 | - | |
| Cone17ag0641 | 1015 | Pfam | Elongation factor Tu GTP binding domain | 7 | 224 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cone17ag0641 | 1015 | FunFam | Elongation factor 2-like protein | 1 | 213 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag0641 | Cone-Chr17:3709823 | Cone3ag1479 | Cone-Chr3:33478279 | 2.71E-98 | dispersed | |
| Cone17ag0641 | Cone-Chr17:3709823 | Cone7ag0591 | Cone-Chr7:2838868 | 1.59E-57 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone17ag0641 | K14536 | - | csv:101220903 | 1472.99 |