Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0671 ATGAGGGCTTCTCTGAGATTGTTTTCTTCATCTCCATTGTTTCTTATTCTGCTAATTCTAAACACACAGATTGTACAGTCAAGCCGAATCAAAGGAACGGACAGATTGCAGAGCTCTAATGATTCATCAATGGTCGACAGGTCGCACCATGCTCAGAATCAACATGCTGTTGATGATCCAGACCACGTTGCATCATTGGTTGATATGAGCATCCGAAATAGTACGGAGAGAAGGAAATTGGGGTACTTTTCATGTGGAACAGGGAATCCAATTGACGACTGCTGGCGCTGCGACACGCGCTGGCATCTACGCCGAAAACACTTGGCCAACTGTGCCATAGGGTTTGGCCGAAATGCAGTCGGCGGCCGAGACGGGCGATACTATGTGGTCAACAATGGAGGAGATGACGACCCCGTTAACCCGAAACCTGGTACGCTCCGCCATGCAGTTATCCAAGACCAACCATTGTGGATCGTGTTCAAGCGCGACATGGTGATCACACTACAGCAAGAGCTTATTATGAACAGCTTCAAGACAATTGATGCCCGTGGTGCTAATGTCCATATTGCTTATGGGGCTTGCATTACTATACAATTTGTTACCAACGTTATAATACATGGCTTGAATATACATCACTGCAAGCCAACAGGCAATGCCATGGTTAGGAGCTCGCCTAGCCATTATGGCTGGAGAACTATGGCGGATGGGGATGGGATTTCAATTTTTGGATCGAGCCATATTTGGATTGACCACAATTCTCTTTCTAATTGTGCCGATGGGCTTATTGATGCTATAATGGGCTCCACTGCTATTACAATTTCTAACAATTACTTCACCCATCACAACGAGGTGATGCTACTTGGACATAGTGATGCCTATACAAGAGACAAGCAAATGCAAGTGACCATTGCCTATAACCATTTTGGTGAGGGTCTAATGCAACGAATGCCAAGATGTAGACACGGGTATTTCCACGTGGTAAATAATGATTACACGCATTGGGAAATGTACGCGATTGGCGGAAGTGCTAATCCGACCATTAACAGTCAAGGCAATAGATATCTTGCCCCTACCAACCCATTTGCTAAGGAGGTTACAAAGAGGGTCACTTCTTATTCAAGTGAATGGAAAGGTTGGAATTGGAGATCAGAGGGAGATCTTATGCTGAATGGGGCCTACTTCACTTCATCAGGTGCAGGTTCTTCATCTTCTTATGCTAGAGCCTCGAGCTTAGGAGCCAAATCCTCCTCCATGGTTGGATCCCTCACTTCTGCTGCCGGTGCTCTTTCTTGCCGTTGGGGCTACCGCTGTTAA 1314 46.12 MRASLRLFSSSPLFLILLILNTQIVQSSRIKGTDRLQSSNDSSMVDRSHHAQNQHAVDDPDHVASLVDMSIRNSTERRKLGYFSCGTGNPIDDCWRCDTRWHLRRKHLANCAIGFGRNAVGGRDGRYYVVNNGGDDDPVNPKPGTLRHAVIQDQPLWIVFKRDMVITLQQELIMNSFKTIDARGANVHIAYGACITIQFVTNVIIHGLNIHHCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDAYTRDKQMQVTIAYNHFGEGLMQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPTNPFAKEVTKRVTSYSSEWKGWNWRSEGDLMLNGAYFTSSGAGSSSSYARASSLGAKSSSMVGSLTSAAGALSCRWGYRC 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4247745 4251534 - Conep17aG0068900.1 Cone17ag0671 456148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0671 437 PANTHER PECTATE LYASE 18-RELATED 25 432 IPR045032 GO:0030570(InterPro)
Cone17ag0671 437 MobiDBLite consensus disorder prediction 35 50 - -
Cone17ag0671 437 SUPERFAMILY Pectin lyase-like 66 431 IPR011050 -
Cone17ag0671 437 Gene3D - 88 430 IPR012334 -
Cone17ag0671 437 FunFam Pectate lyase 88 430 - -
Cone17ag0671 437 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Cone17ag0671 437 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Cone17ag0671 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Cone17ag0671 437 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Cone17ag0671 437 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Cone17ag0671 437 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Cone17ag0671 437 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Cone17ag0671 437 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Cone17ag0671 437 MobiDBLite consensus disorder prediction 35 59 - -
Cone17ag0671 437 SMART amb_all 163 360 IPR002022 -
Cone17ag0671 437 Pfam Pectate lyase 183 352 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0210 Cone-Chr14:975609 Cone17ag0671 Cone-Chr17:4247745 3.08E-238 dispersed
Cone17ag0671 Cone-Chr17:4247745 Cone4ag0383 Cone-Chr4:1736681 1.76E-236 dispersed
Cone17ag0671 Cone-Chr17:4247745 Cone15ag0231 Cone-Chr15:1079114 1.07E-238 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0671 K01728 - csv:101207204 734.176