Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0682 ATGAAAATGGGGGAAAGGCCTAGTATGTTTATTCAAAGACCGAGCACGAAGCAGCTGAGTATTGCTAGTAGTAGTCACAACATGGGGATGATATCCGGACCGCTTTCCTCATCTATATTACAATCTAATGGCGGAGGAGTCCCCGGTCCCACATTTTCGCCGAATCTTCTTCAATACTCTTCTTCTCTTTCATCATCAGCAACCGATGGCACACCAGCATTGCTGCCCGGTTTTCTTGATCTGTCCATAGAGAGGAACGATTGGGAGGAATGGGCTGATCAGTTGATGAGTGATGATTCTTTGAGTTCTTGTAATTGGAATGAGCTTTTAGTTGATACGCAAGTAGCCGATCTGGATCCACAGATGGCATGCCAGGTCTCTACACCATCACCAAATTTTCATCATCAGCAGCAGCAGCATCAGCAACTTCCAGAATTTTCTGGCAATATCCATGCTGTGGGCCCCACCGTTTCCCCGGCTAGTAATATTGCCTTGGCTAATAAGCAGAGAATGCGTTGGACGCCGGAGCTTCATGAAGCGTTCGTGGAGGCTGTAAATCAACTTGGTGGAAGTGAAAGAGCTACCCCTAAGGGTGTTCTAAAGCTATTGAAAGTAGAAGGCTTGACAATCTATCATGTTAAAAGCCATTTGCAGAAATATAGGACTGCTAGATACAGGCCAACATCAGAAGAAGGATCCTCAGGGGATAAGGTGGCATCCCTTGAAGAAACTTCTCTTCACTTGAAACCGGGTATGGATATCACTGAGGCCCTCAGATTGCAGATGGAACTTCAGAAAAGACTCCATGAACAGCTCGAGATCCAAAGAACTCTACAGCTGAGTATAGAAGAACAAGGGAGGTGCCTCCAAATGATGATCGAGAAGCAATGCATTAATAATGACAGGGCGAACAGATCTTCGCCGGATAAGAATTTTCCTTCAGATTCCTATGCAATCGACAATGATTCCTTTCAAGGCCACACGCCTGAAAGAAACAGTATAGAGGCACTTGTAGAAGGAAAACTAAAAGAAGGTCCAGATAATTTTGAGCCTGATGTCTGTGAATCTAATTCCCAGGCAAAAAAGCGCCCCAGAACGGATGAGTAG 1107 45.17 MKMGERPSMFIQRPSTKQLSIASSSHNMGMISGPLSSSILQSNGGGVPGPTFSPNLLQYSSSLSSSATDGTPALLPGFLDLSIERNDWEEWADQLMSDDSLSSCNWNELLVDTQVADLDPQMACQVSTPSPNFHHQQQQHQQLPEFSGNIHAVGPTVSPASNIALANKQRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLLKVEGLTIYHVKSHLQKYRTARYRPTSEEGSSGDKVASLEETSLHLKPGMDITEALRLQMELQKRLHEQLEIQRTLQLSIEEQGRCLQMMIEKQCINNDRANRSSPDKNFPSDSYAIDNDSFQGHTPERNSIEALVEGKLKEGPDNFEPDVCESNSQAKKRPRTDE 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4363368 4366157 + Conep17aG0070000.1 Cone17ag0682 456159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0682 368 Coils Coil 255 275 - -
Cone17ag0682 368 FunFam Myb family transcription factor 167 225 - -
Cone17ag0682 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 86 335 IPR046955 GO:0003700(InterPro)
Cone17ag0682 368 MobiDBLite consensus disorder prediction 334 368 - -
Cone17ag0682 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 225 IPR017930 -
Cone17ag0682 368 MobiDBLite consensus disorder prediction 301 330 - -
Cone17ag0682 368 MobiDBLite consensus disorder prediction 301 368 - -
Cone17ag0682 368 MobiDBLite consensus disorder prediction 222 241 - -
Cone17ag0682 368 Pfam MYB-CC type transfactor, LHEQLE motif 252 297 IPR025756 -
Cone17ag0682 368 NCBIfam myb-like DNA-binding domain, SHAQKYF class 168 222 IPR006447 GO:0003677(InterPro)
Cone17ag0682 368 SUPERFAMILY Homeodomain-like 167 222 IPR009057 -
Cone17ag0682 368 Pfam Myb-like DNA-binding domain 170 221 IPR001005 -
Cone17ag0682 368 Gene3D - 167 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0682 Cone-Chr17:4363368 Cone5ag0561 Cone-Chr5:2394518 4.42E-54 dispersed
Cone17ag0682 Cone-Chr17:4363368 Cone10ag0633 Cone-Chr10:3037495 1.29E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45048 PF00076 RRM_1 2.80E-17 CL0221 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0682 - - - 0.0