Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0682 ATGAAAATGGGGGAAAGGCCTAGTATGTTTATTCAAAGACCGAGCACGAAGCAGCTGAGTATTGCTAGTAGTAGTCACAACATGGGGATGATATCCGGACCGCTTTCCTCATCTATATTACAATCTAATGGCGGAGGAGTCCCCGGTCCCACATTTTCGCCGAATCTTCTTCAATACTCTTCTTCTCTTTCATCATCAGCAACCGATGGCACACCAGCATTGCTGCCCGGTTTTCTTGATCTGTCCATAGAGAGGAACGATTGGGAGGAATGGGCTGATCAGTTGATGAGTGATGATTCTTTGAGTTCTTGTAATTGGAATGAGCTTTTAGTTGATACGCAAGTAGCCGATCTGGATCCACAGATGGCATGCCAGGTCTCTACACCATCACCAAATTTTCATCATCAGCAGCAGCAGCATCAGCAACTTCCAGAATTTTCTGGCAATATCCATGCTGTGGGCCCCACCGTTTCCCCGGCTAGTAATATTGCCTTGGCTAATAAGCAGAGAATGCGTTGGACGCCGGAGCTTCATGAAGCGTTCGTGGAGGCTGTAAATCAACTTGGTGGAAGTGAAAGAGCTACCCCTAAGGGTGTTCTAAAGCTATTGAAAGTAGAAGGCTTGACAATCTATCATGTTAAAAGCCATTTGCAGAAATATAGGACTGCTAGATACAGGCCAACATCAGAAGAAGGATCCTCAGGGGATAAGGTGGCATCCCTTGAAGAAACTTCTCTTCACTTGAAACCGGGTATGGATATCACTGAGGCCCTCAGATTGCAGATGGAACTTCAGAAAAGACTCCATGAACAGCTCGAGATCCAAAGAACTCTACAGCTGAGTATAGAAGAACAAGGGAGGTGCCTCCAAATGATGATCGAGAAGCAATGCATTAATAATGACAGGGCGAACAGATCTTCGCCGGATAAGAATTTTCCTTCAGATTCCTATGCAATCGACAATGATTCCTTTCAAGGCCACACGCCTGAAAGAAACAGTATAGAGGCACTTGTAGAAGGAAAACTAAAAGAAGGTCCAGATAATTTTGAGCCTGATGTCTGTGAATCTAATTCCCAGGCAAAAAAGCGCCCCAGAACGGATGAGTAG 1107 45.17 MKMGERPSMFIQRPSTKQLSIASSSHNMGMISGPLSSSILQSNGGGVPGPTFSPNLLQYSSSLSSSATDGTPALLPGFLDLSIERNDWEEWADQLMSDDSLSSCNWNELLVDTQVADLDPQMACQVSTPSPNFHHQQQQHQQLPEFSGNIHAVGPTVSPASNIALANKQRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLLKVEGLTIYHVKSHLQKYRTARYRPTSEEGSSGDKVASLEETSLHLKPGMDITEALRLQMELQKRLHEQLEIQRTLQLSIEEQGRCLQMMIEKQCINNDRANRSSPDKNFPSDSYAIDNDSFQGHTPERNSIEALVEGKLKEGPDNFEPDVCESNSQAKKRPRTDE 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4363368 4366157 + Conep17aG0070000.1 Cone17ag0682 456159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0682 368 Coils Coil 255 275 - -
Cone17ag0682 368 FunFam Myb family transcription factor 167 225 - -
Cone17ag0682 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 86 335 IPR046955 GO:0003700(InterPro)
Cone17ag0682 368 MobiDBLite consensus disorder prediction 334 368 - -
Cone17ag0682 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 225 IPR017930 -
Cone17ag0682 368 MobiDBLite consensus disorder prediction 301 330 - -
Cone17ag0682 368 MobiDBLite consensus disorder prediction 301 368 - -
Cone17ag0682 368 MobiDBLite consensus disorder prediction 222 241 - -
Cone17ag0682 368 Pfam MYB-CC type transfactor, LHEQLE motif 252 297 IPR025756 -
Cone17ag0682 368 NCBIfam myb-like DNA-binding domain, SHAQKYF class 168 222 IPR006447 GO:0003677(InterPro)
Cone17ag0682 368 SUPERFAMILY Homeodomain-like 167 222 IPR009057 -
Cone17ag0682 368 Pfam Myb-like DNA-binding domain 170 221 IPR001005 -
Cone17ag0682 368 Gene3D - 167 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0682 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0682 Cone-Chr17:4363368 Cone5ag0561 Cone-Chr5:2394518 4.42E-54 dispersed
Cone17ag0682 Cone-Chr17:4363368 Cone10ag0633 Cone-Chr10:3037495 1.29E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g615 Blo05g00493 . . Bda10g00450 . Bpe06g00341 . . . . Cma02g01726 Cma19g00111 Car02g01478 . . . . . . . . . . . . . . . . . . Cone17ag0682 . . . . . Chy04g01110 . . Blo10g00280 . . . . Bma09g00485 Bma15g00732 . Cmo02g01770 Cmo19g00123 . . . . Cpe05g00081 . . . . . . . . Cla07g00121 Cam07g0128 Cec07g0164 Cco07g0129 Clacu07g0122 Cmu07g0186 Cre07g0492 . Csa03g02617 . Cme04g00960
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0401 . 1 288 G2-like Transcription Factor Family AT3G24120 62.5 3.7e-82 302.4
Cone7ag0390 . 1 288 G2-like Transcription Factor Family AT3G24120 61.5 1.2e-80 297.4
Cone8ag1607 . 25 175 G2-like Transcription Factor Family AT3G24120 62.0 1.2e-40 164.5
Cone3ag1514 . 32 173 G2-like Transcription Factor Family AT3G24120 62.0 4.6e-40 162.5
Cone10ag1448 . 32 173 G2-like Transcription Factor Family AT3G24120 61.4 1.0e-39 161.4
Cone18ag1238 . 270 476 G2-like Transcription Factor Family AT5G16560 57.8 1.4e-47 188.0
Cone12ag0486 . 157 360 G2-like Transcription Factor Family AT5G16560 50.7 2.9e-37 153.7
Cone7ag1407 . 4 183 G2-like Transcription Factor Family AT5G42630 57.0 6.7e-44 174.9
Cone4ag1544 . 2 177 G2-like Transcription Factor Family AT5G42630 58.8 3.4e-40 162.5
Cone20ag0163 . 112 263 G2-like Transcription Factor Family AT5G42630 60.5 7.9e-37 151.4
Cone1ag0620 . 1 325 G2-like Transcription Factor Family AT5G59570 50.3 8.6e-63 238.0
Cone19ag0853 . 1 273 G2-like Transcription Factor Family AT1G25550 58.2 6.1e-63 238.4
Cone13ag0852 . 20 275 G2-like Transcription Factor Family AT1G25550 57.7 2.3e-62 236.5
Cone9ag0476 . 12 255 G2-like Transcription Factor Family AT1G25550 56.9 4.1e-59 225.7
Cone6ag0464 . 12 255 G2-like Transcription Factor Family AT1G25550 56.6 7.0e-59 224.9
Cone13ag0852 . 20 315 G2-like Transcription Factor Family AT1G68670 51.3 1.8e-67 253.8
Cone19ag0853 . 19 306 G2-like Transcription Factor Family AT1G68670 53.3 5.2e-67 252.3
Cone6ag0464 . 12 292 G2-like Transcription Factor Family AT1G68670 52.1 3.5e-63 239.6
Cone5ag1126 . 1 263 G2-like Transcription Factor Family AT3G46640 54.6 1.0e-64 244.6
Cone1ag0620 . 1 285 G2-like Transcription Factor Family AT3G46640 52.1 1.4e-63 240.7
Cone10ag0471 . 1 333 G2-like Transcription Factor Family AT5G05090 51.9 4.8e-73 271.9
Cone3ag0500 . 1 332 G2-like Transcription Factor Family AT5G05090 51.5 3.4e-71 265.8
Cone4ag0401 . 1 291 G2-like Transcription Factor Family AT4G13640 58.7 2.5e-62 236.5
Cone7ag0390 . 1 291 G2-like Transcription Factor Family AT4G13640 58.5 1.4e-60 230.7
Cone10ag0633 . 88 350 G2-like Transcription Factor Family AT3G04450 54.4 6.8e-55 212.2
Cone17ag0682 . 83 296 G2-like Transcription Factor Family AT3G04450 55.5 8.4e-45 178.7
Cone4ag0401 . 1 288 G2-like Transcription Factor Family AT3G24120 62.5 3.7e-82 302.4
Cone7ag0390 . 1 288 G2-like Transcription Factor Family AT3G24120 61.5 1.2e-80 297.4
Cone8ag1607 . 25 175 G2-like Transcription Factor Family AT3G24120 62.0 1.2e-40 164.5
Cone3ag1514 . 32 173 G2-like Transcription Factor Family AT3G24120 62.0 4.6e-40 162.5
Cone10ag1448 . 32 173 G2-like Transcription Factor Family AT3G24120 61.4 1.0e-39 161.4
Cone6ag0578 . 5 267 G2-like Transcription Factor Family AT1G69580 53.5 3.8e-51 199.5
Cone9ag0583 . 5 257 G2-like Transcription Factor Family AT1G69580 52.0 3.6e-49 193.0
Cone10ag0559 . 54 247 G2-like Transcription Factor Family AT1G69580 55.6 4.1e-37 152.9
Cone8ag1607 . 1 301 G2-like Transcription Factor Family AT1G79430 57.0 5.1e-70 262.3
Cone3ag1514 . 1 322 G2-like Transcription Factor Family AT1G79430 51.6 2.8e-68 256.5
Cone10ag1448 . 1 326 G2-like Transcription Factor Family AT1G79430 51.5 3.1e-67 253.1
Cone4ag0401 . 34 197 G2-like Transcription Factor Family AT1G79430 62.2 1.5e-40 164.5
Cone7ag0390 . 19 225 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-39 160.6
Cone1ag0088 . 80 297 G2-like Transcription Factor Family AT2G01060 70.2 2.1e-59 226.5
Cone5ag1779 . 80 301 G2-like Transcription Factor Family AT2G01060 68.9 7.8e-59 224.6
Cone10ag0471 . 1 333 G2-like Transcription Factor Family AT3G10760 60.9 5.3e-93 338.6
Cone3ag0500 . 1 332 G2-like Transcription Factor Family AT3G10760 59.4 9.9e-92 334.3
Cone10ag0471 . 1 220 G2-like Transcription Factor Family AT2G40970 59.9 3.0e-61 232.6
Cone3ag0500 . 1 218 G2-like Transcription Factor Family AT2G40970 60.0 1.5e-60 230.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004632 1 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45048 PF00076 RRM_1 2.80E-17 CL0221 Cone TF