Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0728 ATGGGGAGAGGAAAGATTGAGATAAAACGCATTGAGAACACGACGAATCGTCAGGTGACGTTCTGTAAGAGAAGAAATGGACTGATGAAGAAAGCATATGAGCTATCAGTCCTCTGCGATGCTGAACTGTCCCTTATTGTCTTCTCCGGCCGTGGCCGCCTCTACGAGTATTCTAATAATAACAATATAAAATCGACCATAGAGAAGTACAGGAAGGCTTGCTCATCCGACACCACCCTCATAGACTCGGATATTCATGAACTCAATACTCAGTACTACCAGCAGGAATCTGCAAAACTACGTCAACAAATCAAGATGTTGCAGAATTCTAACAGGCACTTAATGGGGGATTCCTTGAGTTCCTTGACTGTCAAGGAACTAAAGCAAGTAGAAAACAGACTTGAGCGAGGCTTAGCAAGGATCAGGGCCAAGAAGTATGAGATGTTTCTGGCGGAAATTGAATACATGCAGAAGAAGGAGATTCAGATCGAAAATGAGAATATGTGCCTACGCACCAAGATAGCAGAAATTGAGAAGATAGAGCAAGAGAATATGATGTCTGGACAGGAATACACTGCCATGCAGACACTCGTTTCCCGCAACTTCTTCGGTGATCAGGAAATGATCGAGGCCAGAACCCATGCTTTCTCGCCTCAGGAGAAGAAGAACATCAATATTCTCCATCTTGGGTAA 693 43.87 MGRGKIEIKRIENTTNRQVTFCKRRNGLMKKAYELSVLCDAELSLIVFSGRGRLYEYSNNNNIKSTIEKYRKACSSDTTLIDSDIHELNTQYYQQESAKLRQQIKMLQNSNRHLMGDSLSSLTVKELKQVENRLERGLARIRAKKYEMFLAEIEYMQKKEIQIENENMCLRTKIAEIEKIEQENMMSGQEYTAMQTLVSRNFFGDQEMIEARTHAFSPQEKKNINILHLG 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5336181 5338800 - Conep17aG0074600.1 Cone17ag0728 456205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0728 230 Pfam K-box region 88 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone17ag0728 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone17ag0728 230 FunFam MADS-box transcription factor 21 13 80 - -
Cone17ag0728 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone17ag0728 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone17ag0728 230 Gene3D - 13 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 Coils Coil 124 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1416 Cone-Chr10:10986119 Cone17ag0728 Cone-Chr17:5336181 2.48E-71 dispersed
Cone14ag0123 Cone-Chr14:568720 Cone17ag0728 Cone-Chr17:5336181 1.03E-39 dispersed
Cone16ag0224 Cone-Chr16:1634376 Cone17ag0728 Cone-Chr17:5336181 7.27E-42 dispersed
Cone17ag0728 Cone-Chr17:5336181 Cone6ag0933 Cone-Chr6:4798470 7.27E-71 dispersed
Cone17ag0728 Cone-Chr17:5336181 Cone17ag0729 Cone-Chr17:5341153 1.68E-67 tandem
Cone2ag0785 Cone-Chr2:33829864 Cone17ag0728 Cone-Chr17:5336181 1.36E-15 transposed
Cone7ag1577 Cone-Chr7:10800518 Cone17ag0728 Cone-Chr17:5336181 1.42E-22 transposed
Cone17ag0728 Cone-Chr17:5336181 Cone20ag0710 Cone-Chr20:4562009 9.70E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45053 PF01336 tRNA_anti-codon 2.10E-08 CL0021 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0728 K09264 - rcu:8269985 328.561