Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0728 ATGGGGAGAGGAAAGATTGAGATAAAACGCATTGAGAACACGACGAATCGTCAGGTGACGTTCTGTAAGAGAAGAAATGGACTGATGAAGAAAGCATATGAGCTATCAGTCCTCTGCGATGCTGAACTGTCCCTTATTGTCTTCTCCGGCCGTGGCCGCCTCTACGAGTATTCTAATAATAACAATATAAAATCGACCATAGAGAAGTACAGGAAGGCTTGCTCATCCGACACCACCCTCATAGACTCGGATATTCATGAACTCAATACTCAGTACTACCAGCAGGAATCTGCAAAACTACGTCAACAAATCAAGATGTTGCAGAATTCTAACAGGCACTTAATGGGGGATTCCTTGAGTTCCTTGACTGTCAAGGAACTAAAGCAAGTAGAAAACAGACTTGAGCGAGGCTTAGCAAGGATCAGGGCCAAGAAGTATGAGATGTTTCTGGCGGAAATTGAATACATGCAGAAGAAGGAGATTCAGATCGAAAATGAGAATATGTGCCTACGCACCAAGATAGCAGAAATTGAGAAGATAGAGCAAGAGAATATGATGTCTGGACAGGAATACACTGCCATGCAGACACTCGTTTCCCGCAACTTCTTCGGTGATCAGGAAATGATCGAGGCCAGAACCCATGCTTTCTCGCCTCAGGAGAAGAAGAACATCAATATTCTCCATCTTGGGTAA 693 43.87 MGRGKIEIKRIENTTNRQVTFCKRRNGLMKKAYELSVLCDAELSLIVFSGRGRLYEYSNNNNIKSTIEKYRKACSSDTTLIDSDIHELNTQYYQQESAKLRQQIKMLQNSNRHLMGDSLSSLTVKELKQVENRLERGLARIRAKKYEMFLAEIEYMQKKEIQIENENMCLRTKIAEIEKIEQENMMSGQEYTAMQTLVSRNFFGDQEMIEARTHAFSPQEKKNINILHLG 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5336181 5338800 - Conep17aG0074600.1 Cone17ag0728 456205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0728 230 Pfam K-box region 88 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone17ag0728 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone17ag0728 230 FunFam MADS-box transcription factor 21 13 80 - -
Cone17ag0728 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone17ag0728 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone17ag0728 230 Gene3D - 13 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0728 230 Coils Coil 124 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0728 K09264 - - rcu:8269985 328.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1416 Cone-Chr10:10986119 Cone17ag0728 Cone-Chr17:5336181 2.48E-71 dispersed
Cone14ag0123 Cone-Chr14:568720 Cone17ag0728 Cone-Chr17:5336181 1.03E-39 dispersed
Cone16ag0224 Cone-Chr16:1634376 Cone17ag0728 Cone-Chr17:5336181 7.27E-42 dispersed
Cone17ag0728 Cone-Chr17:5336181 Cone6ag0933 Cone-Chr6:4798470 7.27E-71 dispersed
Cone17ag0728 Cone-Chr17:5336181 Cone17ag0729 Cone-Chr17:5341153 1.68E-67 tandem
Cone2ag0785 Cone-Chr2:33829864 Cone17ag0728 Cone-Chr17:5336181 1.36E-15 transposed
Cone7ag1577 Cone-Chr7:10800518 Cone17ag0728 Cone-Chr17:5336181 1.42E-22 transposed
Cone17ag0728 Cone-Chr17:5336181 Cone20ag0710 Cone-Chr20:4562009 9.70E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone10ag1416 . 12 251 MADS-box Gene Family AT3G58780 63.8 4.9e-75 278.5
Cone6ag0933 . 18 274 MADS-box Gene Family AT3G58780 58.5 1.1e-71 267.3
Cone9ag0936 . 18 271 MADS-box Gene Family AT3G58780 58.1 9.9e-68 254.2
Cone17ag0728 . 1 187 MADS-box Gene Family AT3G58780 62.6 6.2e-62 235.0
Cone16ag0224 . 1 199 MADS-box Gene Family AT1G26310 61.7 3.0e-64 242.7
Cone17ag0728 . 1 230 MADS-box Gene Family AT4G09960 64.4 6.4e-74 274.6
Cone10ag1416 . 25 201 MADS-box Gene Family AT4G09960 71.8 7.1e-65 244.6
Cone6ag0933 . 20 207 MADS-box Gene Family AT4G09960 67.6 1.6e-64 243.4
Cone9ag0936 . 20 206 MADS-box Gene Family AT4G09960 68.1 1.8e-63 240.0
Cone4ag1281 . 1 149 MADS-box Gene Family AT4G09960 51.0 4.8e-37 152.1
Cone1ag1119 . 1 171 MADS-box Gene Family AT3G61120 53.2 1.5e-44 177.2
Cone15ag0346 . 1 218 MADS-box Gene Family AT4G11880 54.1 2.6e-48 189.5
Cone11ag0371 . 1 204 MADS-box Gene Family AT4G11880 55.4 1.3e-47 187.2
Cone18ag1119 . 1 205 MADS-box Gene Family AT4G11880 53.5 3.8e-47 185.7
Cone15ag0131 . 1 202 MADS-box Gene Family AT4G11880 52.2 4.0e-41 165.6
Cone14ag0123 . 1 212 MADS-box Gene Family AT4G11880 51.6 1.2e-40 164.1
Cone4ag1281 . 1 222 MADS-box Gene Family AT2G22630 63.7 7.8e-56 214.5
Cone20ag0564 . 1 218 MADS-box Gene Family AT2G22630 50.4 6.2e-53 204.9
Cone10ag1087 . 1 224 MADS-box Gene Family AT2G22630 58.4 7.5e-51 198.0
Cone11ag0371 . 1 204 MADS-box Gene Family AT4G22950 59.2 1.2e-53 207.2
Cone15ag0346 . 1 218 MADS-box Gene Family AT4G22950 54.8 7.8e-53 204.5
Cone18ag1119 . 1 213 MADS-box Gene Family AT4G22950 55.0 1.5e-51 200.3
Cone14ag0123 . 1 212 MADS-box Gene Family AT4G22950 52.8 5.6e-43 171.8
Cone15ag0131 . 1 212 MADS-box Gene Family AT4G22950 50.2 4.0e-41 165.6
Cone2ag0486 . 1 207 MADS-box Gene Family AT5G15800 55.2 2.1e-52 203.4
Cone18ag1146 . 1 198 MADS-box Gene Family AT5G15800 55.4 6.2e-49 191.8
Cone1ag1119 . 1 173 MADS-box Gene Family AT5G15800 57.4 1.0e-43 174.5
Cone15ag0346 . 1 158 MADS-box Gene Family AT2G45660 75.3 5.8e-58 221.1
Cone11ag0371 . 1 155 MADS-box Gene Family AT2G45660 73.5 1.2e-55 213.4
Cone18ag1119 . 1 156 MADS-box Gene Family AT2G45660 70.5 3.9e-54 208.4
Cone14ag0123 . 1 156 MADS-box Gene Family AT2G45660 62.8 8.1e-44 174.1
Cone15ag0131 . 1 156 MADS-box Gene Family AT2G45660 60.9 1.4e-43 173.3
Cone4ag1281 . 1 229 MADS-box Gene Family AT4G37940 59.3 3.0e-57 219.2
Cone20ag0564 . 1 216 MADS-box Gene Family AT4G37940 55.4 5.6e-56 214.9
Cone10ag1087 . 1 164 MADS-box Gene Family AT4G37940 67.1 3.5e-50 195.7
Cone9ag1445 . 2 234 MADS-box Gene Family AT2G22540 64.8 6.9e-71 264.6
Cone6ag1530 . 2 157 MADS-box Gene Family AT2G22540 76.3 3.2e-60 229.2
Cone7ag0856 . 1 233 MADS-box Gene Family AT2G22540 54.7 5.9e-54 208.4
Cone17ag1176 . 3 238 MADS-box Gene Family AT2G22540 51.9 2.7e-51 199.5
Cone4ag1298 . 1 235 MADS-box Gene Family AT2G22540 54.3 1.8e-50 196.8
Cone7ag0856 . 1 232 MADS-box Gene Family AT4G24540 57.9 6.8e-57 218.0
Cone17ag1176 . 3 238 MADS-box Gene Family AT4G24540 53.8 2.0e-56 216.5
Cone4ag1298 . 1 234 MADS-box Gene Family AT4G24540 56.6 2.2e-55 213.0
Cone20ag0555 . 3 238 MADS-box Gene Family AT4G24540 53.0 1.6e-53 206.8
Cone9ag1445 . 2 231 MADS-box Gene Family AT4G24540 53.5 6.0e-53 204.9
Cone6ag1530 . 2 176 MADS-box Gene Family AT4G24540 60.0 3.6e-50 195.7
Cone1ag1119 . 1 169 MADS-box Gene Family AT2G03710 53.5 2.4e-39 159.5
Cone6ag1100 . 1 158 MADS-box Gene Family AT5G23260 53.2 7.1e-40 161.8
Cone1ag1119 . 1 168 MADS-box Gene Family AT3G02310 57.9 7.4e-42 167.9
Cone2ag0486 . 1 110 MADS-box Gene Family AT3G02310 75.5 9.9e-39 157.5
Cone15ag0131 . 1 150 MADS-box Gene Family AT5G62165 64.0 1.7e-46 183.0
Cone15ag0346 . 1 145 MADS-box Gene Family AT5G62165 63.4 4.9e-46 181.4
Cone11ag0371 . 1 145 MADS-box Gene Family AT5G62165 62.1 7.1e-45 177.6
Cone18ag1119 . 1 145 MADS-box Gene Family AT5G62165 60.0 6.0e-44 174.5
Cone14ag0123 . 1 150 MADS-box Gene Family AT5G62165 60.0 5.1e-43 171.4
Cone10ag1087 . 1 143 MADS-box Gene Family AT2G14210 78.5 1.7e-53 206.8
Cone4ag1281 . 1 141 MADS-box Gene Family AT2G14210 77.6 4.9e-53 205.3
Cone20ag0564 . 1 142 MADS-box Gene Family AT2G14210 72.7 3.3e-49 192.6
Cone10ag1416 . 25 253 MADS-box Gene Family AT2G42830 65.1 9.3e-71 264.2
Cone6ag0933 . 18 274 MADS-box Gene Family AT2G42830 55.7 5.0e-64 241.9
Cone9ag0936 . 18 242 MADS-box Gene Family AT2G42830 60.9 2.1e-62 236.5
Cone17ag0728 . 1 183 MADS-box Gene Family AT2G42830 64.9 2.3e-61 233.0
Cone18ag1119 . 1 172 MADS-box Gene Family AT2G45650 54.7 1.0e-40 164.5
Cone11ag0371 . 1 172 MADS-box Gene Family AT2G45650 52.9 1.6e-38 157.1
Cone15ag0346 . 1 171 MADS-box Gene Family AT2G45650 50.9 2.0e-36 150.2
Cone5ag1604 . 41 158 MADS-box Gene Family AT1G29960 54.2 2.6e-37 152.1
Cone16ag0224 . 63 190 MADS-box Gene Family AT1G69120 62.8 1.2e-36 150.6
Cone15ag0131 . 1 144 MADS-box Gene Family AT5G51870 59.3 4.6e-41 165.2
Cone14ag0123 . 1 144 MADS-box Gene Family AT5G51870 57.9 5.7e-39 158.3
Cone18ag1119 . 1 144 MADS-box Gene Family AT5G51870 55.9 4.8e-38 155.2
Cone15ag0346 . 1 144 MADS-box Gene Family AT5G51870 53.8 5.3e-37 151.8
Cone11ag0371 . 1 144 MADS-box Gene Family AT5G51870 54.5 1.2e-36 150.6
Cone15ag0131 . 1 212 MADS-box Gene Family AT5G51860 52.6 1.8e-48 189.9
Cone16ag0224 . 63 252 MADS-box Gene Family AT5G60910 53.9 1.2e-40 163.7
Cone14ag0608 . 3 178 MADS-box Gene Family AT1G24260 60.1 2.1e-48 189.9
Cone15ag0614 . 1 191 MADS-box Gene Family AT1G24260 54.9 3.7e-48 189.1
Cone1ag1119 . 1 174 MADS-box Gene Family AT1G24260 53.9 1.1e-41 167.5
Cone16ag0224 . 1 158 MADS-box Gene Family AT1G24260 53.0 4.0e-39 159.1
Cone7ag1502 . 1 138 MADS-box Gene Family AT5G20240 65.5 8.2e-46 180.6
Cone7ag1502 . 1 138 MADS-box Gene Family AT5G20240 65.5 8.2e-46 180.6
Cone10ag1416 . 12 251 MADS-box Gene Family AT3G58780 63.8 4.9e-75 278.5
Cone6ag0933 . 18 274 MADS-box Gene Family AT3G58780 58.5 1.1e-71 267.3
Cone9ag0936 . 18 271 MADS-box Gene Family AT3G58780 58.1 9.9e-68 254.2
Cone17ag0728 . 1 187 MADS-box Gene Family AT3G58780 62.6 6.2e-62 235.0
Cone2ag0486 . 1 207 MADS-box Gene Family AT5G15800 55.2 2.1e-52 203.4
Cone18ag1146 . 1 198 MADS-box Gene Family AT5G15800 55.4 6.2e-49 191.8
Cone1ag1119 . 1 173 MADS-box Gene Family AT5G15800 57.4 1.0e-43 174.5
Cone1ag1119 . 1 169 MADS-box Gene Family AT2G03710 53.5 2.4e-39 159.5
Cone1ag1119 . 1 168 MADS-box Gene Family AT3G02310 57.9 7.4e-42 167.9
Cone2ag0486 . 1 110 MADS-box Gene Family AT3G02310 75.5 9.9e-39 157.5
Cone10ag1416 . 25 253 MADS-box Gene Family AT2G42830 65.1 9.3e-71 264.2
Cone6ag0933 . 18 274 MADS-box Gene Family AT2G42830 55.7 5.0e-64 241.9
Cone9ag0936 . 18 242 MADS-box Gene Family AT2G42830 60.9 2.1e-62 236.5
Cone17ag0728 . 1 183 MADS-box Gene Family AT2G42830 64.9 2.3e-61 233.0
Cone18ag1119 . 1 172 MADS-box Gene Family AT2G45650 54.7 1.0e-40 164.5
Cone11ag0371 . 1 172 MADS-box Gene Family AT2G45650 52.9 1.6e-38 157.1
Cone15ag0346 . 1 171 MADS-box Gene Family AT2G45650 50.9 2.0e-36 150.2
Cone16ag0224 . 63 190 MADS-box Gene Family AT1G69120 62.8 1.2e-36 150.6
Cone16ag0224 . 63 252 MADS-box Gene Family AT5G60910 53.9 1.2e-40 163.7
Cone14ag0608 . 3 178 MADS-box Gene Family AT1G24260 60.1 2.1e-48 189.9
Cone15ag0614 . 1 191 MADS-box Gene Family AT1G24260 54.9 3.7e-48 189.1
Cone1ag1119 . 1 174 MADS-box Gene Family AT1G24260 53.9 1.1e-41 167.5
Cone16ag0224 . 1 158 MADS-box Gene Family AT1G24260 53.0 4.0e-39 159.1
Cone16ag0224 . 1 199 MADS-box Gene Family AT1G26310 61.7 3.0e-64 242.7
Cone17ag0728 . 1 230 MADS-box Gene Family AT4G09960 64.4 6.4e-74 274.6
Cone10ag1416 . 25 201 MADS-box Gene Family AT4G09960 71.8 7.1e-65 244.6
Cone6ag0933 . 20 207 MADS-box Gene Family AT4G09960 67.6 1.6e-64 243.4
Cone9ag0936 . 20 206 MADS-box Gene Family AT4G09960 68.1 1.8e-63 240.0
Cone4ag1281 . 1 149 MADS-box Gene Family AT4G09960 51.0 4.8e-37 152.1
Cone1ag1119 . 1 171 MADS-box Gene Family AT3G61120 53.2 1.5e-44 177.2
Cone15ag0346 . 1 218 MADS-box Gene Family AT4G11880 54.1 2.6e-48 189.5
Cone11ag0371 . 1 204 MADS-box Gene Family AT4G11880 55.4 1.3e-47 187.2
Cone18ag1119 . 1 205 MADS-box Gene Family AT4G11880 53.5 3.8e-47 185.7
Cone15ag0131 . 1 202 MADS-box Gene Family AT4G11880 52.2 4.0e-41 165.6
Cone14ag0123 . 1 212 MADS-box Gene Family AT4G11880 51.6 1.2e-40 164.1
Cone4ag1281 . 1 222 MADS-box Gene Family AT2G22630 63.7 7.8e-56 214.5
Cone20ag0564 . 1 218 MADS-box Gene Family AT2G22630 50.4 6.2e-53 204.9
Cone10ag1087 . 1 224 MADS-box Gene Family AT2G22630 58.4 7.5e-51 198.0
Cone11ag0371 . 1 204 MADS-box Gene Family AT4G22950 59.2 1.2e-53 207.2
Cone15ag0346 . 1 218 MADS-box Gene Family AT4G22950 54.8 7.8e-53 204.5
Cone18ag1119 . 1 213 MADS-box Gene Family AT4G22950 55.0 1.5e-51 200.3
Cone14ag0123 . 1 212 MADS-box Gene Family AT4G22950 52.8 5.6e-43 171.8
Cone15ag0131 . 1 212 MADS-box Gene Family AT4G22950 50.2 4.0e-41 165.6
Cone15ag0346 . 1 158 MADS-box Gene Family AT2G45660 75.3 5.8e-58 221.1
Cone11ag0371 . 1 155 MADS-box Gene Family AT2G45660 73.5 1.2e-55 213.4
Cone18ag1119 . 1 156 MADS-box Gene Family AT2G45660 70.5 3.9e-54 208.4
Cone14ag0123 . 1 156 MADS-box Gene Family AT2G45660 62.8 8.1e-44 174.1
Cone15ag0131 . 1 156 MADS-box Gene Family AT2G45660 60.9 1.4e-43 173.3
Cone4ag1281 . 1 229 MADS-box Gene Family AT4G37940 59.3 3.0e-57 219.2
Cone20ag0564 . 1 216 MADS-box Gene Family AT4G37940 55.4 5.6e-56 214.9
Cone10ag1087 . 1 164 MADS-box Gene Family AT4G37940 67.1 3.5e-50 195.7
Cone9ag1445 . 2 234 MADS-box Gene Family AT2G22540 64.8 6.9e-71 264.6
Cone6ag1530 . 2 157 MADS-box Gene Family AT2G22540 76.3 3.2e-60 229.2
Cone7ag0856 . 1 233 MADS-box Gene Family AT2G22540 54.7 5.9e-54 208.4
Cone17ag1176 . 3 238 MADS-box Gene Family AT2G22540 51.9 2.7e-51 199.5
Cone4ag1298 . 1 235 MADS-box Gene Family AT2G22540 54.3 1.8e-50 196.8
Cone7ag0856 . 1 232 MADS-box Gene Family AT4G24540 57.9 6.8e-57 218.0
Cone17ag1176 . 3 238 MADS-box Gene Family AT4G24540 53.8 2.0e-56 216.5
Cone4ag1298 . 1 234 MADS-box Gene Family AT4G24540 56.6 2.2e-55 213.0
Cone20ag0555 . 3 238 MADS-box Gene Family AT4G24540 53.0 1.6e-53 206.8
Cone9ag1445 . 2 231 MADS-box Gene Family AT4G24540 53.5 6.0e-53 204.9
Cone6ag1530 . 2 176 MADS-box Gene Family AT4G24540 60.0 3.6e-50 195.7
Cone6ag1100 . 1 158 MADS-box Gene Family AT5G23260 53.2 7.1e-40 161.8
Cone15ag0131 . 1 150 MADS-box Gene Family AT5G62165 64.0 1.7e-46 183.0
Cone15ag0346 . 1 145 MADS-box Gene Family AT5G62165 63.4 4.9e-46 181.4
Cone11ag0371 . 1 145 MADS-box Gene Family AT5G62165 62.1 7.1e-45 177.6
Cone18ag1119 . 1 145 MADS-box Gene Family AT5G62165 60.0 6.0e-44 174.5
Cone14ag0123 . 1 150 MADS-box Gene Family AT5G62165 60.0 5.1e-43 171.4
Cone10ag1087 . 1 143 MADS-box Gene Family AT2G14210 78.5 1.7e-53 206.8
Cone4ag1281 . 1 141 MADS-box Gene Family AT2G14210 77.6 4.9e-53 205.3
Cone20ag0564 . 1 142 MADS-box Gene Family AT2G14210 72.7 3.3e-49 192.6
Cone5ag1604 . 41 158 MADS-box Gene Family AT1G29960 54.2 2.6e-37 152.1
Cone15ag0131 . 1 144 MADS-box Gene Family AT5G51870 59.3 4.6e-41 165.2
Cone14ag0123 . 1 144 MADS-box Gene Family AT5G51870 57.9 5.7e-39 158.3
Cone18ag1119 . 1 144 MADS-box Gene Family AT5G51870 55.9 4.8e-38 155.2
Cone15ag0346 . 1 144 MADS-box Gene Family AT5G51870 53.8 5.3e-37 151.8
Cone11ag0371 . 1 144 MADS-box Gene Family AT5G51870 54.5 1.2e-36 150.6
Cone15ag0131 . 1 212 MADS-box Gene Family AT5G51860 52.6 1.8e-48 189.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000220 5 8 4 7 6 6 7 6 5 4 5 5 5 4 4 4 7 9 6 6 5 4 5 5 6 7 5 6 9 3 168
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45053 PF01336 tRNA_anti-codon 2.10E-08 CL0021 Cone TF