Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0755 ATGGCAGCCCTGCAGCAAACCCCCATTTACCTGCAATCCAAACTGCCATCATCACAGATCCCAAGAAAACTTTCCGCCCTCAACCTCTCCTTCTCCGCCACCATCCCCTCCCTCAAAATCACTACCACCAACCCTGTCCTCAACCACCGCTCCCAAGGCGCCGGAGCAGCCGGAGCCAGAATGTCCGCCAGCGCCTCCGCTAGCTACGCCTCCGCGCTAGCCGACGTGGCTAAATCCAACAACACTCTCGACTTGACCAGCGCCGACGTCGAGAAGATCGACAAGTTCTTCTCCGAGCCAGAGGTTTTCGGGTTCTTCGCAAACCCAACCATCGACCTCGAGAAGAAGCGCAAAATGCTCGACGAGGTCGTGTCGTCGACAAAACTCCAGCCGCACACGGCGAATTTCCTCAACATCCTGGTCGACGGGAAGAGGATCGATCTGATCAGGGAGATTGTGTCGGAGTTCGAGATCGCGTATAACAAATTGACCGACACAGAGGTGGCGGTGGTGAGCTCGGTAGTGGCGCTGGAGTCGCAGCACCTGGCTCAGATAGCGAAGCAGGTCCAGAAATTGACCGGCGCGAAGAACGTAAGGATCAAGACGGTGATCGAGCCGAGCTTGGTGGCCGGATTCACTGTTAGGTTTGGGGATTCAGGATCGAAGCTGATTGATTTGAGCGTGAAGAAACAGCTTGAGGAAATTGCTACTCAGCTTGATCTTGGTGATATCCAGCTCAGTGTATGA 747 55.15 MAALQQTPIYLQSKLPSSQIPRKLSALNLSFSATIPSLKITTTNPVLNHRSQGAGAAGARMSASASASYASALADVAKSNNTLDLTSADVEKIDKFFSEPEVFGFFANPTIDLEKKRKMLDEVVSSTKLQPHTANFLNILVDGKRIDLIREIVSEFEIAYNKLTDTEVAVVSSVVALESQHLAQIAKQVQKLTGAKNVRIKTVIEPSLVAGFTVRFGDSGSKLIDLSVKKQLEEIATQLDLGDIQLSV 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5671832 5672968 + Conep17aG0077300.1 Cone17ag0755 456232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0755 248 PRINTS ATP synthase delta subunit signature 134 145 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone17ag0755 248 PRINTS ATP synthase delta subunit signature 214 232 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone17ag0755 248 PRINTS ATP synthase delta subunit signature 145 159 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone17ag0755 248 PRINTS ATP synthase delta subunit signature 196 211 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone17ag0755 248 PRINTS ATP synthase delta subunit signature 65 84 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone17ag0755 248 Pfam ATP synthase delta (OSCP) subunit 67 239 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone17ag0755 248 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 198 217 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Cone17ag0755 248 Gene3D - 66 157 IPR026015 -
Cone17ag0755 248 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 66 164 IPR026015 -
Cone17ag0755 248 PANTHER ATP SYNTHASE DELTA CHAIN 37 239 IPR000711 GO:0009535(PANTHER)|GO:0009772(PANTHER)|GO:0009773(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cone17ag0755 248 NCBIfam ATP synthase F1 subunit delta 67 239 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone17ag0755 248 Hamap ATP synthase subunit delta [atpD]. 61 241 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0755 Cone-Chr17:5671832 Cone20ag0682 Cone-Chr20:4212310 8.75E-108 dispersed
Cone17ag0755 Cone-Chr17:5671832 Cone20ag1069 Cone-Chr20:7462213 2.09E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0755 K02113 - mdm:103443904 298.13