Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0769 ATGGTTCTTGTAACCTGTTCTGTGTACTCACTAGCGCATCTCTCCCAGAACATGTTGGACAACATAACACTGCAATTTACTATTCACGTCTCCCTTTCTGCACTCACCATGTTCCTTCTCAAGATATTCAGATCAACGGCTTTCAGTGTTTATGGATACCTCAATTTCACCAAGTCTGGTTTCAGTAAACATTCTCAGACATTCAAACAAGAGGAGATGCAAATCAGTATGGAAGGCAAACATTGCATTGTTACAGGGGCTAATTCCGGGATCGGTTATGCAACTGCTCAGGGTCTTGCTTCTCGCGGGGCGACTGTGTATATGGTGTGCCGTAATAAGGAAAGGGGAGAAGCCGCTGTTTCTAGTATTCAATCCATAACAGGAAACCAAGATGTTCATTTAGAGGTTTGTGATCTTTCTTCTGTTAGTGATATCAAGTCATTTGCCACCAAGTTTTCTTCAAAGGCTGTTCTGGTTCATGTACTGGTTAACAATGCGGGATTGCTTGAAAATAAGCGAGTTACTACATCGGAAGGGTTCGAATTGAATTTTGCCGTGAATGTATTAGGCACTTATACCTTGACAGAATCACTGCTTCCCCTGCTCGAGAAAGCCGCACCTGATGCCAAAGTCATCACTGTCTCCTCTGGAGGAATGTACGCTGCTCCCTTAACCAATGACCTTGAGTACAGCGATGGAAACTTCAATGGAGTAGACCAATATGCCCGGAATAAACGAGTTCAGGTGGCTCTAACGGAAAAATGGGCCGAAGTGCATGGAAACAAGGGGATAGGATTTTACTCTATGCATCCGGGGTGGGTCCAAACGCCTGGAGTCAGTAAAAGCTTGCCGGAATTTTCTAAAGTATTATCCGGAAAGCTTAGAACAAGCATGGAAGGAGCTGATACAATTATTTGGTTGGCTTTACAACCCAAAGAAAAATTGGTATCTGGTTCGTTTTATTTCGATCGAGGTGAAGCGCCAAAGCATCTCAAATTTGCTACAGCAGCTTCTTCCCATGCAATAATCGGGGCCGTTATTGACAAGCTTCAATCCTTGTCTAAAATCTCGTCGTGTAATTGA 1083 43.58 MVLVTCSVYSLAHLSQNMLDNITLQFTIHVSLSALTMFLLKIFRSTAFSVYGYLNFTKSGFSKHSQTFKQEEMQISMEGKHCIVTGANSGIGYATAQGLASRGATVYMVCRNKERGEAAVSSIQSITGNQDVHLEVCDLSSVSDIKSFATKFSSKAVLVHVLVNNAGLLENKRVTTSEGFELNFAVNVLGTYTLTESLLPLLEKAAPDAKVITVSSGGMYAAPLTNDLEYSDGNFNGVDQYARNKRVQVALTEKWAEVHGNKGIGFYSMHPGWVQTPGVSKSLPEFSKVLSGKLRTSMEGADTIIWLALQPKEKLVSGSFYFDRGEAPKHLKFATAASSHAIIGAVIDKLQSLSKISSCN 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5825263 5827905 + Conep17aG0078700.1 Cone17ag0769 456246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0769 360 PRINTS Glucose/ribitol dehydrogenase family signature 290 310 IPR002347 -
Cone17ag0769 360 PRINTS Glucose/ribitol dehydrogenase family signature 157 168 IPR002347 -
Cone17ag0769 360 PRINTS Glucose/ribitol dehydrogenase family signature 81 98 IPR002347 -
Cone17ag0769 360 PRINTS Glucose/ribitol dehydrogenase family signature 262 279 IPR002347 -
Cone17ag0769 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 76 328 IPR036291 -
Cone17ag0769 360 Pfam short chain dehydrogenase 80 280 IPR002347 -
Cone17ag0769 360 PANTHER DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 12 31 356 IPR052992 -
Cone17ag0769 360 Gene3D - 65 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0769 K11168 - - mdm:103444727 522.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0769 Cone-Chr17:5825263 Cone20ag0359 Cone-Chr20:1614811 7.34E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1333 . Blo12g00773 . Bda03g00406 . Bpe04g00370 Bma04g00386 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0769 Cone20ag0359 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g00777
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009720 3 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 1 1 4 1 33