Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0784 ATGTCATTCAGAAGCATAGTCCGTGATGTTAGGGATGGGTTTGGAAGCTTGTCGAGGCGTAGTTTTGAGTTAAGATTTCCAGGTCATCACGATCATCATCATAGGGGGAAATCACACGGATTGGTTCATGAGTTACTGGACCAGACCATTGTGATCCAGACTAGCTGGTGGGCTAGCCTGCCTCCAGAGTTACTGCGAGACGTGGTCAAGAGATTGGAGGCGAGTGAGAGTACATGGCCTGCTCGGAAGAACGTTGTTGCTTGCTCGGCTGTTTGTCGGTCTTGGAGGGAAATGTGTAGAGAAATTGTCATGACTCCGGAATATTCTGGAAAGATTACCTTCCCTATCTCGCTCAAGCAGCCTGGTCCTCGAGATGGAACACTCCAATGCTTCATAAAGAGAGACAAATCTAATTTTACTTATCATCTTTTCCTTTGTCTTAGTCCAGCTTTGCTTGTCGAGAATGGAAAATTTCTTCTTTCTGCAAAGCGGACAAGGAGAACTACTTGCACAGAGTATGTGATCTCAATGGACGCTGATAATATATCGAGATCAAGTAGTACTTACATTGGAAAACTGAGGTCAAATTATCTCGGGACGAAATTCATCATTTGCGATACACAACCACCCTACAAAAACGCTCAGCAGCTTCCTCAACCAGGTAGAAGCCGAAGATTCTACTCCAAAAAGGTCTCCCCAAAGGTGCCCACAGGCAGCTACACCATTGCCCAAGTCAGTTACAATCTGAACGTTCTCGGCACAAGGGGCCCACGCCGGATGCAATGCACAATGCTCTCTATCCCGGCCTCATCCCTTGACCCCGGTGGGCTTGTCCCGGGCCAGCCCAAGCTCCTCACCCGTTCCCTCCTCGAGGACTCCTTCCGAAGCAACATCTCCTCCTTCTCAAAGTCCATCGATTTCCCCAGCGCCCGATTCTCTGACATTGCTTCTGGTTTAAACTATGAAGAAGAAGATCAAGATGATCAGAAGGAGATGCGACCGTTGATTCTTCGAAACAGGGCACCTAGGTGGCACGAGCGGTTGCAGTGTTGGTGTTTGAATTTTAGGGGGAGAGTGACTGTGGCTTCCGTGAAGAACTTTCAGCTGATTGCTGCCACTCAGCCGCCAGTGGCTGCTGCTCCTACTGGAGCCCCATCAGGGGAAGTTGCAGTACGGCTGCCGCCACCCTCGGCGATGACCCAACAGACACAACCAGTGAGTCAGTCAGACCATGATAAGATTATCCTTCAGTTTGGAAAGGTTGGTAAGGATATGTTTACTATGGATTATAGGTATCCCTTGTCCGCTTTTCAAGCCTTCGCTATCTGCCTTAGCAGCTTCGATACGAAATTGGCATGTGAATAA 1365 48.72 MSFRSIVRDVRDGFGSLSRRSFELRFPGHHDHHHRGKSHGLVHELLDQTIVIQTSWWASLPPELLRDVVKRLEASESTWPARKNVVACSAVCRSWREMCREIVMTPEYSGKITFPISLKQPGPRDGTLQCFIKRDKSNFTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNYLGTKFIICDTQPPYKNAQQLPQPGRSRRFYSKKVSPKVPTGSYTIAQVSYNLNVLGTRGPRRMQCTMLSIPASSLDPGGLVPGQPKLLTRSLLEDSFRSNISSFSKSIDFPSARFSDIASGLNYEEEDQDDQKEMRPLILRNRAPRWHERLQCWCLNFRGRVTVASVKNFQLIAATQPPVAAAPTGAPSGEVAVRLPPPSAMTQQTQPVSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6042285 6045616 - Conep17aG0080200.1 Cone17ag0784 456261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0784 454 ProSitePatterns Tub family signature 1. 355 368 IPR018066 -
Cone17ag0784 454 Pfam F-box-like 57 100 IPR001810 GO:0005515(InterPro)
Cone17ag0784 454 CDD F-box_AtTLP-like 57 101 - -
Cone17ag0784 454 PRINTS Tubby superfamily signature 239 266 IPR000007 -
Cone17ag0784 454 PRINTS Tubby superfamily signature 432 454 IPR000007 -
Cone17ag0784 454 PRINTS Tubby superfamily signature 411 430 IPR000007 -
Cone17ag0784 454 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Cone17ag0784 454 PRINTS Tubby superfamily signature 337 354 IPR000007 -
Cone17ag0784 454 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Cone17ag0784 454 PRINTS Tubby superfamily signature 355 371 IPR000007 -
Cone17ag0784 454 SUPERFAMILY F-box domain 52 100 IPR036047 GO:0005515(InterPro)
Cone17ag0784 454 SUPERFAMILY Tubby C-terminal domain-like 106 454 IPR025659 -
Cone17ag0784 454 Gene3D - 53 104 - -
Cone17ag0784 454 Pfam Tub family 118 449 IPR000007 -
Cone17ag0784 454 ProSitePatterns Tub family signature 2. 439 454 IPR018066 -
Cone17ag0784 454 Gene3D Tubby Protein; Chain A 117 448 IPR025659 -
Cone17ag0784 454 PANTHER TUBBY-RELATED 52 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0784 Cone-Chr17:6042285 Cone8ag0970 Cone-Chr8:9140265 1.26E-214 dispersed
Cone17ag0784 Cone-Chr17:6042285 Cone20ag0378 Cone-Chr20:1761994 5.62E-306 wgd
Cone17ag0784 Cone-Chr17:6042285 Cone4ag1499 Cone-Chr4:11673097 9.66E-215 wgd
Cone17ag0784 Cone-Chr17:6042285 Cone7ag1448 Cone-Chr7:10255177 5.53E-237 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45055 PF04427 Brix 1.30E-28 CL0458 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0784 K19600 - rcu:8283226 684.485