Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone17ag0784 | ATGTCATTCAGAAGCATAGTCCGTGATGTTAGGGATGGGTTTGGAAGCTTGTCGAGGCGTAGTTTTGAGTTAAGATTTCCAGGTCATCACGATCATCATCATAGGGGGAAATCACACGGATTGGTTCATGAGTTACTGGACCAGACCATTGTGATCCAGACTAGCTGGTGGGCTAGCCTGCCTCCAGAGTTACTGCGAGACGTGGTCAAGAGATTGGAGGCGAGTGAGAGTACATGGCCTGCTCGGAAGAACGTTGTTGCTTGCTCGGCTGTTTGTCGGTCTTGGAGGGAAATGTGTAGAGAAATTGTCATGACTCCGGAATATTCTGGAAAGATTACCTTCCCTATCTCGCTCAAGCAGCCTGGTCCTCGAGATGGAACACTCCAATGCTTCATAAAGAGAGACAAATCTAATTTTACTTATCATCTTTTCCTTTGTCTTAGTCCAGCTTTGCTTGTCGAGAATGGAAAATTTCTTCTTTCTGCAAAGCGGACAAGGAGAACTACTTGCACAGAGTATGTGATCTCAATGGACGCTGATAATATATCGAGATCAAGTAGTACTTACATTGGAAAACTGAGGTCAAATTATCTCGGGACGAAATTCATCATTTGCGATACACAACCACCCTACAAAAACGCTCAGCAGCTTCCTCAACCAGGTAGAAGCCGAAGATTCTACTCCAAAAAGGTCTCCCCAAAGGTGCCCACAGGCAGCTACACCATTGCCCAAGTCAGTTACAATCTGAACGTTCTCGGCACAAGGGGCCCACGCCGGATGCAATGCACAATGCTCTCTATCCCGGCCTCATCCCTTGACCCCGGTGGGCTTGTCCCGGGCCAGCCCAAGCTCCTCACCCGTTCCCTCCTCGAGGACTCCTTCCGAAGCAACATCTCCTCCTTCTCAAAGTCCATCGATTTCCCCAGCGCCCGATTCTCTGACATTGCTTCTGGTTTAAACTATGAAGAAGAAGATCAAGATGATCAGAAGGAGATGCGACCGTTGATTCTTCGAAACAGGGCACCTAGGTGGCACGAGCGGTTGCAGTGTTGGTGTTTGAATTTTAGGGGGAGAGTGACTGTGGCTTCCGTGAAGAACTTTCAGCTGATTGCTGCCACTCAGCCGCCAGTGGCTGCTGCTCCTACTGGAGCCCCATCAGGGGAAGTTGCAGTACGGCTGCCGCCACCCTCGGCGATGACCCAACAGACACAACCAGTGAGTCAGTCAGACCATGATAAGATTATCCTTCAGTTTGGAAAGGTTGGTAAGGATATGTTTACTATGGATTATAGGTATCCCTTGTCCGCTTTTCAAGCCTTCGCTATCTGCCTTAGCAGCTTCGATACGAAATTGGCATGTGAATAA | 1365 | 48.72 | MSFRSIVRDVRDGFGSLSRRSFELRFPGHHDHHHRGKSHGLVHELLDQTIVIQTSWWASLPPELLRDVVKRLEASESTWPARKNVVACSAVCRSWREMCREIVMTPEYSGKITFPISLKQPGPRDGTLQCFIKRDKSNFTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNYLGTKFIICDTQPPYKNAQQLPQPGRSRRFYSKKVSPKVPTGSYTIAQVSYNLNVLGTRGPRRMQCTMLSIPASSLDPGGLVPGQPKLLTRSLLEDSFRSNISSFSKSIDFPSARFSDIASGLNYEEEDQDDQKEMRPLILRNRAPRWHERLQCWCLNFRGRVTVASVKNFQLIAATQPPVAAAPTGAPSGEVAVRLPPPSAMTQQTQPVSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 454 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 6042285 | 6045616 | - | Conep17aG0080200.1 | Cone17ag0784 | 456261 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone17ag0784 | 454 | ProSitePatterns | Tub family signature 1. | 355 | 368 | IPR018066 | - | |
Cone17ag0784 | 454 | Pfam | F-box-like | 57 | 100 | IPR001810 | GO:0005515(InterPro) | |
Cone17ag0784 | 454 | CDD | F-box_AtTLP-like | 57 | 101 | - | - | |
Cone17ag0784 | 454 | PRINTS | Tubby superfamily signature | 239 | 266 | IPR000007 | - | |
Cone17ag0784 | 454 | PRINTS | Tubby superfamily signature | 432 | 454 | IPR000007 | - | |
Cone17ag0784 | 454 | PRINTS | Tubby superfamily signature | 411 | 430 | IPR000007 | - | |
Cone17ag0784 | 454 | PRINTS | Tubby superfamily signature | 189 | 213 | IPR000007 | - | |
Cone17ag0784 | 454 | PRINTS | Tubby superfamily signature | 337 | 354 | IPR000007 | - | |
Cone17ag0784 | 454 | PRINTS | Tubby superfamily signature | 173 | 189 | IPR000007 | - | |
Cone17ag0784 | 454 | PRINTS | Tubby superfamily signature | 355 | 371 | IPR000007 | - | |
Cone17ag0784 | 454 | SUPERFAMILY | F-box domain | 52 | 100 | IPR036047 | GO:0005515(InterPro) | |
Cone17ag0784 | 454 | SUPERFAMILY | Tubby C-terminal domain-like | 106 | 454 | IPR025659 | - | |
Cone17ag0784 | 454 | Gene3D | - | 53 | 104 | - | - | |
Cone17ag0784 | 454 | Pfam | Tub family | 118 | 449 | IPR000007 | - | |
Cone17ag0784 | 454 | ProSitePatterns | Tub family signature 2. | 439 | 454 | IPR018066 | - | |
Cone17ag0784 | 454 | Gene3D | Tubby Protein; Chain A | 117 | 448 | IPR025659 | - | |
Cone17ag0784 | 454 | PANTHER | TUBBY-RELATED | 52 | 453 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag0784 | Cone-Chr17:6042285 | Cone8ag0970 | Cone-Chr8:9140265 | 1.26E-214 | dispersed | |
Cone17ag0784 | Cone-Chr17:6042285 | Cone20ag0378 | Cone-Chr20:1761994 | 5.62E-306 | wgd | |
Cone17ag0784 | Cone-Chr17:6042285 | Cone4ag1499 | Cone-Chr4:11673097 | 9.66E-215 | wgd | |
Cone17ag0784 | Cone-Chr17:6042285 | Cone7ag1448 | Cone-Chr7:10255177 | 5.53E-237 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45055 | PF04427 | Brix | 1.30E-28 | CL0458 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone17ag0784 | K19600 | - | rcu:8283226 | 684.485 |