Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0787 ATGGAAGGGAATTTATCACTAGAGGGAATGATTCCATGTGGGAATTCATTTGGAGGTCTAGATGTTCGAGCATCACTTAGGGTTCATCAAAATCCACAACATTCTCTTCTTCAATCTCGTCAATCTCGTGAAGGTCTTTCTATCCATCCCTCTGTTCAAGAGGGATTCCCATTAACTAGTGGGCATGGGCAACACAATTGCGAAAAGACCCTATCAATGGCAGATTACAATAAGGGAGAAAGGGGGAAAAACTTGGTAAGTGACGATGAAGATCCGAGCTTTACAGAAGAGGGTAATTCTAATCCTAACAATTATAAAGGGAAGAAGGGGTCGCAATGGCAGAGAGTGAAATGGACGGATAAGATGGTGATGCTTTTAATCACAGCTGTTTCTTATGTAGGAGATGACAATAATTCCTCTTCCAGTCTAGGTGGAAGAAGAAAGTTTTCTGTTATACAGAAAAAGGGCAAGTGGAAATGCATCTCTAAGGTAATGGCGGAAAGGAGTTACCATGTATCTCCTCAGCAATGTGAGGATAAGTTTAATGATCTCAATAAAAGGTACAAGAGGCTCAATGATATGCTAGGAAGAGGTACTTCTTGCCAAGTAGTTGAAAATCCTGCTCTTCTAGATATCATAGATTACTTGAATGAGAAAGAGAAAGATGATGTGAGAAAGATTTTGAGCTCTAAGCACCTTTTCTATGAAGCCATGTGTTCTTACCATAATGGGAATAGATTGCATCTCCCTCCTGACCTGGCTTTGCAACGGTCCCTACAGTTTGCTCTTAGAAGTAGAGATGGTTATGATAATAACGATGACCAGAGGAGGAGGGACCCACATGAAGATTTCGATGAAGATGATGATCAAGATGTTGAAAGTGATGGTGATGATGACGATCTTGACGAGAATCATGGGAATAACAACAGGGGATTCAAAAGGGTTAAACAAGTCCAAGGCCATGTAGATGTTATTAGCTTTGGCCTAGGTGACATGAATAAAGTGTTATTGGATGATAATAATAGTAGCATGAGAGCTTCTTGGAGTGGTCAGAAGCATTGGATGGAGTCTAGGTCGATTCAGTTGGAAGAGCAGAAGGTTCAGATTCAGATGGAGTTGTTGGAATTGGAGAAACAGAGGTTCAAATGGCAGAGGTTGTGTAAGAAGAGAGACCATGAGTTGGATAAGATGAGGATGGCGAACGCGAGAATGAAGCTTGAGAATGAGAGGATGACAGTAGAGTTGAAGCGGAAGGAATTTGGTGCCGGGCTTAGTTGA 1278 41.47 MEGNLSLEGMIPCGNSFGGLDVRASLRVHQNPQHSLLQSRQSREGLSIHPSVQEGFPLTSGHGQHNCEKTLSMADYNKGERGKNLVSDDEDPSFTEEGNSNPNNYKGKKGSQWQRVKWTDKMVMLLITAVSYVGDDNNSSSSLGGRRKFSVIQKKGKWKCISKVMAERSYHVSPQQCEDKFNDLNKRYKRLNDMLGRGTSCQVVENPALLDIIDYLNEKEKDDVRKILSSKHLFYEAMCSYHNGNRLHLPPDLALQRSLQFALRSRDGYDNNDDQRRRDPHEDFDEDDDQDVESDGDDDDLDENHGNNNRGFKRVKQVQGHVDVISFGLGDMNKVLLDDNNSSMRASWSGQKHWMESRSIQLEEQKVQIQMELLELEKQRFKWQRLCKKRDHELDKMRMANARMKLENERMTVELKRKEFGAGLS 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6080905 6082351 - Conep17aG0080500.1 Cone17ag0787 456264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0787 425 MobiDBLite consensus disorder prediction 79 111 - -
Cone17ag0787 425 Pfam Myb/SANT-like DNA-binding domain 115 205 IPR044822 -
Cone17ag0787 425 MobiDBLite consensus disorder prediction 265 314 - -
Cone17ag0787 425 Coils Coil 389 419 - -
Cone17ag0787 425 MobiDBLite consensus disorder prediction 267 283 - -
Cone17ag0787 425 MobiDBLite consensus disorder prediction 284 302 - -
Cone17ag0787 425 PANTHER F16F4.11 PROTEIN-RELATED 1 420 - -
Cone17ag0787 425 Coils Coil 359 379 - -
Cone17ag0787 425 Gene3D - 118 190 - -
Cone17ag0787 425 MobiDBLite consensus disorder prediction 96 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0787 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0442 Cone-Chr1:3979122 Cone17ag0787 Cone-Chr17:6080905 1.56E-65 transposed
Cone3ag0196 Cone-Chr3:1015656 Cone17ag0787 Cone-Chr17:6080905 5.59E-56 transposed
Cone5ag1465 Cone-Chr5:9690458 Cone17ag0787 Cone-Chr17:6080905 1.48E-69 transposed
Cone17ag0787 Cone-Chr17:6080905 Cone20ag0381 Cone-Chr20:1782599 3.29E-212 wgd
Cone17ag0787 Cone-Chr17:6080905 Cone4ag1503 Cone-Chr4:11692774 1.33E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1382 . Blo12g00789 . Bda03g00389 . Bpe04g00349 Bma04g00366 . Cmo04g02563 Cmo15g00604 . . . . Sed11g1351 . Cpe13g00682 Bhi04g01778 Tan11g1141 Cmetu03g2202 . Hepe02g2794 . Lcy10g1351 Cla08g00710 Cam08g1138 Cec08g0727 Cco08g0835 Clacu08g0846 . Cre08g0647 Cone4ag1503 . Cone17ag0787 Cone20ag0381 . . . Cme03g00318 . . . . . . . . . . . . . Car04g02356 Car15g00553 Cpe01g02116 . . . . . . . . . . . . . . . . . Chy03g00512 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003875 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 3 3 1 3 1 1 2 2 0 2 2 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45056 PF00067 p450 4.70E-67 No_clan Cone TF