Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0793 ATGATGGGTCACGAACAGAGCTATTTAGCAAGAGATGATGATCATGGTGGTCTTCGTACTGTTAAAGACACAGAATCAATTGGATCAGCCTATGATCGATATCTCCAGAGTGCGCAAACGTCTTCATTACCATCTGGAGGAACAAGTCCCTTTGCTGGGACTGGGTCAGGGATGACTGCTCGTAGTAGATTTCCTGGGCTTCCACTCCGAGATCCTACTGCAATAGGCCTGCTTGGAGCTATTTCTCCTAATCAAGGTAGAAATATTGAGTATGATAATCAGCTCCTAGTAGGACGTGAAACAGTACCTCTACCTGCTGATGCTACAAACACTTTATATGTTGAAGGTCTTCCTTCTGACTGTACAAGGCGGGAAGTAGCTCATATTTTTCGTCCTTTTGTTGGATATAAAGAGCTGAGACTTGTGAGCAAAGACTCTAAACATCGTGGTCGAGATCCTCTTATCTTATGTTTTGTCGATTTCATGAGTCCAGCCTGTGCAGCAACGGCTATGAGTGCCTTGCAAGGTTATAAAATGGATGAGCAAGATCCAGATTCTAATTACCTGCGGCTGCAGTTTTCTAGGTATCCAGGCCCGAGATCTAGCTCTAGTTCTGGTGGTTCTGGTAACAAAAGGTAA 639 44.29 MMGHEQSYLARDDDHGGLRTVKDTESIGSAYDRYLQSAQTSSLPSGGTSPFAGTGSGMTARSRFPGLPLRDPTAIGLLGAISPNQGRNIEYDNQLLVGRETVPLPADATNTLYVEGLPSDCTRREVAHIFRPFVGYKELRLVSKDSKHRGRDPLILCFVDFMSPACAATAMSALQGYKMDEQDPDSNYLRLQFSRYPGPRSSSSSGGSGNKR 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6200695 6203417 - Conep17aG0081100.1 Cone17ag0793 456270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0793 212 MobiDBLite consensus disorder prediction 1 21 - -
Cone17ag0793 212 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723(InterPro)
Cone17ag0793 212 MobiDBLite consensus disorder prediction 7 21 - -
Cone17ag0793 212 MobiDBLite consensus disorder prediction 196 212 - -
Cone17ag0793 212 SUPERFAMILY RNA-binding domain, RBD 101 207 IPR035979 GO:0003676(InterPro)
Cone17ag0793 212 Pfam RNA recognition motif 112 180 IPR000504 GO:0003723(InterPro)
Cone17ag0793 212 SMART rrm1_1 111 187 IPR000504 GO:0003723(InterPro)
Cone17ag0793 212 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 7 205 - -
Cone17ag0793 212 CDD RRM_AtNSRA_like 107 195 - -
Cone17ag0793 212 MobiDBLite consensus disorder prediction 191 212 - -
Cone17ag0793 212 Gene3D - 106 196 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0793 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0793 Cone-Chr17:6200695 Cone5ag0710 Cone-Chr5:3045608 6.80E-57 dispersed
Cone17ag0793 Cone-Chr17:6200695 Cone20ag0389 Cone-Chr20:1843412 1.79E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1253 . . . . . . . . Cmo04g02552 Cmo15g00618 . . . . Sed11g1337 . Cpe13g00671 Bhi04g01799 Tan11g1166 Cmetu03g0441 . . . . Cla08g00678 Cam08g1108 Cec08g0694 Cco08g0802 Clacu08g0814 . Cre08g0618 . . Cone17ag0793 Cone20ag0389 . . . Cme03g00377 Blo17g00216 . . Bda13g01524 . Bpe14g00337 . Bma02g00274 . . . . . Car04g02349 Car15g00561 Cpe01g02109 . . . . . . . . . . . . . . . Lsi08g00536 . Chy03g00541 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003751 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 3 1 1 1 1 1 2 5 1 46