Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0803 ATGGCACTAGATAACTGTCTCCAAGTGAGCACAATGTGTGCAACTTATCAACCATTTTGTTCAAAGGAGAAGATCACTACTGGTCTTCTTCCAACATGTAAAGGGTTAAGAAAATCAATCTTTACTCCATCTTCCTCATCAACATTTCCTCTTTCTCACAGATCCAGTTCCAGAAAATCCCGGCTTGTCTGCAAAGCTCGGGAAGCCATAGATCAAGTTAAAGAAGTGAATGATTCGAGCTGGAATAATCTAGTGATAACAAATGAGAACCCAGTTCTAGTAGAGTTTTGGGCCCCATGGTGTGGGCCCTGCCGGATGATAGCTCCGGTTATTGAGGAACTAGCTAAAGAATATGCCGGAAAGATTGCATGTCTGAAGCTGAACACAGATGAGAGCCCAAACATTGCTAGTCAGTATGGGATACGGAGCATTCCTACCGTCTTGTTCTTCACTAACGGTGAAAAGAAAGAGAGTGTCATTGGAGCAGTGCCTAAGTCTACCCTGTCTGCTACCATTGACAAATATGTGGAGAGTTGA 537 43.39 MALDNCLQVSTMCATYQPFCSKEKITTGLLPTCKGLRKSIFTPSSSSTFPLSHRSSSRKSRLVCKAREAIDQVKEVNDSSWNNLVITNENPVLVEFWAPWCGPCRMIAPVIEELAKEYAGKIACLKLNTDESPNIASQYGIRSIPTVLFFTNGEKKESVIGAVPKSTLSATIDKYVES 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6354776 6356144 - Conep17aG0082100.1 Cone17ag0803 456280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0803 178 CDD TRX_family 85 173 - -
Cone17ag0803 178 PRINTS Thioredoxin family signature 92 100 - -
Cone17ag0803 178 PRINTS Thioredoxin family signature 100 109 - -
Cone17ag0803 178 PRINTS Thioredoxin family signature 140 151 - -
Cone17ag0803 178 PANTHER GEO12009P1 48 176 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Cone17ag0803 178 ProSitePatterns Thioredoxin family active site. 93 111 IPR017937 -
Cone17ag0803 178 ProSiteProfiles Thioredoxin domain profile. 38 177 IPR013766 -
Cone17ag0803 178 Pfam Thioredoxin 73 174 IPR013766 -
Cone17ag0803 178 Gene3D Glutaredoxin 72 178 - -
Cone17ag0803 178 NCBIfam thioredoxin 77 175 IPR005746 GO:0015035(InterPro)
Cone17ag0803 178 FunFam Thioredoxin 68 176 - -
Cone17ag0803 178 SUPERFAMILY Thioredoxin-like 62 176 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0803 K03671 - - mdm:114824736 251.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1457 Cone-Chr12:10473132 Cone17ag0803 Cone-Chr17:6354776 7.14E-49 dispersed
Cone14ag1070 Cone-Chr14:8994984 Cone17ag0803 Cone-Chr17:6354776 4.61E-54 dispersed
Cone15ag1059 Cone-Chr15:8773164 Cone17ag0803 Cone-Chr17:6354776 6.24E-54 dispersed
Cone17ag0803 Cone-Chr17:6354776 Cone8ag1505 Cone-Chr8:11392596 1.68E-39 dispersed
Cone5ag0985 Cone-Chr5:4225527 Cone17ag0803 Cone-Chr17:6354776 3.89E-12 transposed
Cone17ag0803 Cone-Chr17:6354776 Cone20ag0407 Cone-Chr20:1980626 8.44E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1199 Blo01g01324 Blo12g01109 . Bda03g00029 . Bpe04g00019 . . Cmo04g02534 Cmo15g00640 . . . . Sed11g1319 . Cpe13g00660 Bhi04g01828 Tan11g1203 Cmetu01g1872 . Hepe02g2753 . Lcy10g1305 Cla08g00654 Cam08g1084 Cec08g0670 Cco08g0779 Clacu08g0788 . Cre08g0593 . . Cone17ag0803 Cone20ag0407 . . . Cme03g00422 . . . . . . . . . . . . . Car04g02331 Car15g00581 Cpe01g02094 . . . . . . . . . . . . . . . Lsi08g00514 . Chy03g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008381 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35