Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0804 ATGGATTCTTCATCGTCTTCGTCAAGTCAGCCTGAATTTGATTATCTGTTCAAGTTGCTGTTGATTGGAGATTCAGGTGTTGGAAAGAGCACTCTGTTGTTGAGCTTTACTTCCGATACTTTTGAAGATCTTTCCCCCACCATTGGTGTTGATTTCAAGGTTAAACATGTAACAATTGGGGGAAAGAAGTTGAAGCTTGCGATTTGGGACACAGCCGGACAGGAAAGATTTAGAACACTTACAAGCTCATATTACAGAGGAGGTCAAGGGATTATAATGGTTTATGACGTAACTAGGCGAGAAACGTTTACAAACTTGTCGGATATATGGGCTAAAGAAATTGATCTCTATTCAATTAATCAAGATTGCATTAAGATGCTTGTTGGAAACAAAGTTGACAAGGAAAGTGAAAGGGTGGTCAGCAAAAAAGAGGGGATTGACTTTGCTCGGGAGTATGGGTGCCTTTTTCTTGAATGTAGTGCAAAAACTCGAGTCAATGTAGAACAATGCTTTGAGGAGCATGTATTAAAGATTTTGGATACACCGAGTCTATTAGCGGAGGGCTCATCAGGTGTGAAGAAGAACATATTCAAACAGGAAGCTCCTCAAACTGATGCATCATCCAGTGGCTGTTGTTCGTGGTGA 645 40.62 MDSSSSSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEDLSPTIGVDFKVKHVTIGGKKLKLAIWDTAGQERFRTLTSSYYRGGQGIIMVYDVTRRETFTNLSDIWAKEIDLYSINQDCIKMLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEHVLKILDTPSLLAEGSSGVKKNIFKQEAPQTDASSSGCCSW 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6359994 6361698 + Conep17aG0082200.1 Cone17ag0804 456281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0804 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 182 IPR027417 -
Cone17ag0804 214 ProSiteProfiles small GTPase Rho family profile. 10 179 - -
Cone17ag0804 214 PANTHER RAS-RELATED PROTEIN RAB 15 185 IPR050227 GO:0016192(PANTHER)
Cone17ag0804 214 FunFam Ras-related protein RABC1 10 212 - -
Cone17ag0804 214 SMART rho_sub_3 19 181 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone17ag0804 214 Pfam Ras family 18 178 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone17ag0804 214 CDD Rab18 17 178 - -
Cone17ag0804 214 SMART rab_sub_5 17 181 - -
Cone17ag0804 214 NCBIfam small GTP-binding protein domain 15 174 IPR005225 GO:0005525(InterPro)
Cone17ag0804 214 ProSiteProfiles small GTPase Rab1 family profile. 12 212 - -
Cone17ag0804 214 SMART ras_sub_4 14 181 - -
Cone17ag0804 214 ProSiteProfiles small GTPase Ras family profile. 9 214 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone17ag0804 214 SMART ran_sub_2 22 214 - -
Cone17ag0804 214 Gene3D - 10 212 IPR027417 -
Cone17ag0804 214 PRINTS Transforming protein P21 ras signature 17 38 - -
Cone17ag0804 214 PRINTS Transforming protein P21 ras signature 121 134 - -
Cone17ag0804 214 PRINTS Transforming protein P21 ras signature 156 178 - -
Cone17ag0804 214 PRINTS Transforming protein P21 ras signature 39 55 - -
Cone17ag0804 214 PRINTS Transforming protein P21 ras signature 57 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0804 K07910 - - gmx:100794330 399.438
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0804 Cone-Chr17:6359994 Cone9ag1233 Cone-Chr9:9005960 1.27E-126 dispersed
Cone17ag0804 Cone-Chr17:6359994 Cone20ag0409 Cone-Chr20:1985749 5.72E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1182 . . . . . . . . . . Cma01g01016 . Car01g00897 . . . . Bhi04g02196 . . . . . . . . . . . . . . . Cone17ag0804 Cone20ag0409 . . . . . . . . . . . . . Cmo01g01058 . . . . . . Cpe02g00861 . . . . . . . . . . . . . . . . Chy03g00809 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000246 3 6 3 2 3 5 8 5 4 5 4 5 7 5 5 6 5 9 7 5 5 5 4 5 4 5 5 6 10 3 154