Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0805 ATGGTGAAAGAAACAGAATATTATGATGTTCTTGGTGTTTCCCACTCCGCTTCCGAGGAGGAAATTCGAAAGGCTTATTACCTTAAGGCAAGACAAGTTCATCCAGATAAGAATCCAAATGACCCTCAGGCAGCTGAAAGGTTCCAGATAATGGGGGAAGCTTATCAAGTTTTGAGTGATCCGGGGCAAAGAGATGCATATGATCAGAATGGGAAACACTTCATTTCGAGGGACTCCATGCTTGATCCTACTGCTGTATTCTCAATTCTGTTTGGGAGTGAATTATTCGAGGACTATATCGGACATGTTGCTGTAGCTTCAATGGCTTCTTCTGAACTAGCTAGTGAAAATGAGAATCCAGAGAAACTTCACGAAAAGTTGAAGGCTATCCAGAAAGAAAGAGAAGAAAAACTAGCAAGATCACTTAGAGATATGCTTAATCAATATGTTCGAGGTGACAAGCAAGGATTCATACGAAATGCTGAATCCGAAGTGAAACGGCTTTCTGGAGCAGCCTTTTCCGTTAACATATTGCACACAATTGGTTACATATATTCGAGACAAGCTGCGCAAAAGCTAGGAAAGAAAGCTAAATATCTTGGGGTTCCGTTTGTGGCCGAATGGGTTCGAAACAAGGGGCATTTTTGGAAATCACAGATGACAGCTGCAAAAGGTGCTTTTCAATTATTGCAGCTTCAAGAAGACGTAAGGAAACAATTTAAGATGGATGGAGGTGGGTCTGGAAACGACATAGAATCACACATAAGGTTAAATAAGGACACATTCGTGAGCTCGTTGTGGAAATTGAATGTTGTCGACATAGAAGTTACCCTTGTCCATGTGTGTCAAATGGTGTTGCAGGATACTAGTATTAGAAGGGAAGAGCTCAAAGCTCGAGCCTTCGCTCTGAAAATTCTCGGAAATATATTTCAGGAAAAGAATGGGAGAAATGGTGGAACGTCAAGAAGGAAAGCGGCTGAAGAAGATGATGATGGCTCCAGTTCTGATAGCAGTGAGGAAGAGGATTCACCAAGATCTCTATCGTATCGAACACCTTTTCTTAATCAGGGCTTTGGAAGACTTTTCAGATGCCTCTGTAACCCAGCATTTGATGTGGATGATGAAGAAATTGTGTACAAAAGCAAATGA 1149 41.43 MVKETEYYDVLGVSHSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQIMGEAYQVLSDPGQRDAYDQNGKHFISRDSMLDPTAVFSILFGSELFEDYIGHVAVASMASSELASENENPEKLHEKLKAIQKEREEKLARSLRDMLNQYVRGDKQGFIRNAESEVKRLSGAAFSVNILHTIGYIYSRQAAQKLGKKAKYLGVPFVAEWVRNKGHFWKSQMTAAKGAFQLLQLQEDVRKQFKMDGGGSGNDIESHIRLNKDTFVSSLWKLNVVDIEVTLVHVCQMVLQDTSIRREELKARAFALKILGNIFQEKNGRNGGTSRRKAAEEDDDGSSSDSSEEEDSPRSLSYRTPFLNQGFGRLFRCLCNPAFDVDDEEIVYKSK 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6367797 6370716 + Conep17aG0082400.1 Cone17ag0805 456282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0805 382 PRINTS DnaJ domain signature 26 41 IPR001623 -
Cone17ag0805 382 PRINTS DnaJ domain signature 43 63 IPR001623 -
Cone17ag0805 382 PRINTS DnaJ domain signature 8 26 IPR001623 -
Cone17ag0805 382 PRINTS DnaJ domain signature 63 82 IPR001623 -
Cone17ag0805 382 MobiDBLite consensus disorder prediction 317 331 - -
Cone17ag0805 382 FunFam Chaperone protein dnaJ 10 1 83 - -
Cone17ag0805 382 Pfam DnaJ domain 6 68 IPR001623 -
Cone17ag0805 382 MobiDBLite consensus disorder prediction 316 349 - -
Cone17ag0805 382 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 2 344 IPR052423 -
Cone17ag0805 382 CDD DnaJ 6 60 IPR001623 -
Cone17ag0805 382 Pfam X-domain of DnaJ-containing 131 325 IPR026894 -
Cone17ag0805 382 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Cone17ag0805 382 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Cone17ag0805 382 Gene3D DnaJ domain 1 83 IPR036869 -
Cone17ag0805 382 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Cone17ag0805 382 SMART dnaj_3 5 63 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0805 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0805 Cone-Chr17:6367797 Cone3ag0071 Cone-Chr3:420586 1.43E-12 dispersed
Cone17ag1483 Cone-Chr17:10006195 Cone17ag0805 Cone-Chr17:6367797 8.36E-129 transposed
Cone8ag1214 Cone-Chr8:10296926 Cone17ag0805 Cone-Chr17:6367797 3.61E-109 transposed
Cone17ag0805 Cone-Chr17:6367797 Cone20ag0410 Cone-Chr20:1988766 4.54E-235 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1178 . Blo12g00834 . Bda03g00342 . Bpe04g00302 . . Cmo04g02530 Cmo15g00644 . . . . . . Cpe13g00655 Bhi04g01834 . . . . . . . . . . . . . . . Cone17ag0805 Cone20ag0410 . . . Cme03g00430 . Blo18g00226 . Bda01g01383 Bpe02g01596 . Bma01g00878 . . . . . . Car04g02328 Car15g00585 Cpe01g02091 . . . . . . . . . . . . . . . . . Chy03g00571 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58