Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0808 ATGAGTAGAAAGAAAGTGAAACTTGTATACATCAGTAATGATTCTGCAAGAAAAGCAACATACAAGAAAAGGAAGAGAGGTCTACTGAAAAAAATTTCTGAGCTAACCACTCTATGTGGGGTTGATGCTTGTGTTATCATCTACAGCCCTTACGAAACCGAACCGGAGGCTTGGCCTTCTCCGTCAGGAGCTGAACGCATTGTTGCGCAGTTCAAGAAGATGCCTGATATGGAGCAAAGCAAGAAGATGGTGAATCAAGAAAGCTTCATAAGGCAGAGAATTGCCAAAGCAAGTGACCAGCTGAAGAAGCAGAGAAAGGATAATAGAGAGGTCGAAATCACTAGGGTTATGTTCCATTGGGGTAAGAGTTATGTGCAGGAGCAGGTTTTTTATCCGACGAGCAATGTGGCACAAGAAGGGAATGTGATCAATAGGCAGCCATGGTTTTTGGAGCTGTTGAGCACAACAGCAGCAACAGAAGCTCATATGGGATTTGGTGCTACTGATGATCATATTATCATGCAATATGCAGATGGTACCCATGATTTTAATTCTTCTTGA 561 42.42 MSRKKVKLVYISNDSARKATYKKRKRGLLKKISELTTLCGVDACVIIYSPYETEPEAWPSPSGAERIVAQFKKMPDMEQSKKMVNQESFIRQRIAKASDQLKKQRKDNREVEITRVMFHWGKSYVQEQVFYPTSNVAQEGNVINRQPWFLELLSTTAATEAHMGFGATDDHIIMQYADGTHDFNSS 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6389272 6390150 - Conep17aG0082700.1 Cone17ag0808 456285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0808 186 Coils Coil 94 114 - -
Cone17ag0808 186 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cone17ag0808 186 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0808 186 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Cone17ag0808 186 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0808 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0808 186 PANTHER MADS BOX PROTEIN 1 113 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone17ag0808 186 Gene3D - 13 115 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0808 186 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0808 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0808 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0808 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0121 Cone-Chr10:622117 Cone17ag0808 Cone-Chr17:6389272 5.50E-22 dispersed
Cone17ag0808 Cone-Chr17:6389272 Cone1ag0816 Cone-Chr1:54044189 4.66E-14 dispersed
Cone17ag0808 Cone-Chr17:6389272 Cone5ag1009 Cone-Chr5:4365469 1.37E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45057 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0808 - - - 0.0