Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0808 ATGAGTAGAAAGAAAGTGAAACTTGTATACATCAGTAATGATTCTGCAAGAAAAGCAACATACAAGAAAAGGAAGAGAGGTCTACTGAAAAAAATTTCTGAGCTAACCACTCTATGTGGGGTTGATGCTTGTGTTATCATCTACAGCCCTTACGAAACCGAACCGGAGGCTTGGCCTTCTCCGTCAGGAGCTGAACGCATTGTTGCGCAGTTCAAGAAGATGCCTGATATGGAGCAAAGCAAGAAGATGGTGAATCAAGAAAGCTTCATAAGGCAGAGAATTGCCAAAGCAAGTGACCAGCTGAAGAAGCAGAGAAAGGATAATAGAGAGGTCGAAATCACTAGGGTTATGTTCCATTGGGGTAAGAGTTATGTGCAGGAGCAGGTTTTTTATCCGACGAGCAATGTGGCACAAGAAGGGAATGTGATCAATAGGCAGCCATGGTTTTTGGAGCTGTTGAGCACAACAGCAGCAACAGAAGCTCATATGGGATTTGGTGCTACTGATGATCATATTATCATGCAATATGCAGATGGTACCCATGATTTTAATTCTTCTTGA 561 42.42 MSRKKVKLVYISNDSARKATYKKRKRGLLKKISELTTLCGVDACVIIYSPYETEPEAWPSPSGAERIVAQFKKMPDMEQSKKMVNQESFIRQRIAKASDQLKKQRKDNREVEITRVMFHWGKSYVQEQVFYPTSNVAQEGNVINRQPWFLELLSTTAATEAHMGFGATDDHIIMQYADGTHDFNSS 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6389272 6390150 - Conep17aG0082700.1 Cone17ag0808 456285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0808 186 Coils Coil 94 114 - -
Cone17ag0808 186 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cone17ag0808 186 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0808 186 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Cone17ag0808 186 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0808 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0808 186 PANTHER MADS BOX PROTEIN 1 113 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone17ag0808 186 Gene3D - 13 115 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0808 186 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0808 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0808 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag0808 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0808 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0121 Cone-Chr10:622117 Cone17ag0808 Cone-Chr17:6389272 5.50E-22 dispersed
Cone17ag0808 Cone-Chr17:6389272 Cone1ag0816 Cone-Chr1:54044189 4.66E-14 dispersed
Cone17ag0808 Cone-Chr17:6389272 Cone5ag1009 Cone-Chr5:4365469 1.37E-54 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45057 None None None None Cone TF