Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0814 ATGGTACCGCCGCCGCACCGTTGCATTTCAGCGCCGGAATCCGACGGCGATACGATGAAGTGCGTATCGTGCTCGGAGGAATACGAGGCATGTGACGCCGGCACGTGCAAGGAGTGCTACGAGGAGGCCAACGAGACTGAAGAAGAGCTCAAGCACGAGATCGAAGATTTGAAGGCTAAAGTCGCTTTCCTCAGCTTCTGGTCTCCTGTCGATCCCCACCATAATCGTTCTAACGCTCTTTGTTTCACCGACGTCGTTTTGGTTGCATCCGATTCCGCGTCGGGTGGACCCTCCTTCCCTGTTCCGGCCCATAAATCTGTTCTGGCAAATCGTTCTCCGGTATTCAAAGCAATGCTCGAGAATGAAATGGAAGAAAGCCTAAGCGGGACCATTAAAATCTCCGACATTTCCTACGACGTCCTTAGAGCCTTTGTTAGCTTTCTATACACTGCAGAAGCATGTCTTGATGAACAAATGGCCTTTGACCTACTAGTATTAGGTGAAAAGTATCAGATCAAGCATCTAAAGAACTATTGTGAGGAGTTCCTGGTTTCAAAACTGAACTGGGATAATTCCGTACTGTGCTATGCCTTTGCTCATCAGCACAATGTTAAGCATATGCTGGAGGCGGCTTTGTCCTTGATTACGGAAAATATGGAGAAGCTTACTAAAAGGGAAGAGTATATAGAGCTTGTGGAGAAGGATCCTAGATTGGTTGTGGAGATTTATGAGGCTTATCTTTCGAAACAGGTTAATACTGCTGCCCAGAAGGATTCTTCTGCGAAATCATAG 792 47.22 MVPPPHRCISAPESDGDTMKCVSCSEEYEACDAGTCKECYEEANETEEELKHEIEDLKAKVAFLSFWSPVDPHHNRSNALCFTDVVLVASDSASGGPSFPVPAHKSVLANRSPVFKAMLENEMEESLSGTIKISDISYDVLRAFVSFLYTAEACLDEQMAFDLLVLGEKYQIKHLKNYCEEFLVSKLNWDNSVLCYAFAHQHNVKHMLEAALSLITENMEKLTKREEYIELVEKDPRLVVEIYEAYLSKQVNTAAQKDSSAKS 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6491411 6493009 + Conep17aG0083300.1 Cone17ag0814 456291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0814 263 Gene3D - 188 262 - -
Cone17ag0814 263 Gene3D Potassium Channel Kv1.1; Chain A 73 187 IPR011333 -
Cone17ag0814 263 Pfam BTB/POZ domain 81 186 IPR000210 GO:0005515(InterPro)
Cone17ag0814 263 Coils Coil 205 225 - -
Cone17ag0814 263 FunFam BTB/POZ domain-containing protein 189 262 - -
Cone17ag0814 263 Coils Coil 36 60 - -
Cone17ag0814 263 PANTHER SPECKLE-TYPE POZ PROTEIN 82 260 - GO:0005737(PANTHER)|GO:0030162(PANTHER)|GO:0031625(PANTHER)|GO:0043161(PANTHER)
Cone17ag0814 263 CDD BACK 190 242 - -
Cone17ag0814 263 ProSiteProfiles BTB domain profile. 83 157 IPR000210 GO:0005515(InterPro)
Cone17ag0814 263 SMART BTB_4 83 187 IPR000210 GO:0005515(InterPro)
Cone17ag0814 263 SUPERFAMILY POZ domain 81 185 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0814 K10523 - - csv:101206278 371.703
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0814 Cone-Chr17:6491411 Cone20ag0419 Cone-Chr20:2047439 1.16E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g203 Blo01g01311 . Bda01g00680 . Bpe02g00625 . . Bma01g02094 . . Cma01g01033 . Car01g00908 . . . . . . . . . . . . . . . . . . . . Cone17ag0814 Cone20ag0419 . . . . . . . . . . . . . Cmo01g01072 . . . . . . Cpe02g00858 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008496 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 0 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45058 PF04852 DUF640 9.30E-65 No_clan Cone TR