Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0817 ATGAAGTTACTCCATAACGGAGTAGCCGGAGAATCCGAACCAGCAGGGTCCGGCGGCCGGAAAGTCGTGGTGGGAATGAAACTCGACGCGCAGAGTAGAGAGCTGCTCACTTGGGCTCTGGTCAAAGTAGCTGAGCCGGGTGACCTTGTTATTGCTCTTCATGTTCTCGCCAACGACGAAATCGTGAATAGAGATGGAAAATCTTCCCTTCTATCTCTTGTCAAAGCGTTCGATTCTGTTCTAGCTGTCTATGAAGGTTTCTGTAACTTAAAACAGGTGGATTTGAAGCTAAAGATCTGCAGAGGTACATCAGCTCGGAAAATAATAGTCCGAGAAGCCGAGTCTTATTCCGCGACAAATGTTATAGTAGGAGCTGCTCATAACCACCATAAATTGAGGCCATTGACCTCTGTTGCTAAGTACTGTGCCCAAAAACTACCTAAGGAGTGTTGGGTTCTTGCTATAAACAATGGCAAAATTGTTTTTAAGAGAGAGGGCTCACCTTCAACCATTGCTTGCTCTCAAGGAAGTGAAGCGAATCATGCAAATGGTTTACTTGGTGCATTTAACAGATCTGTTAGTAAAACTTCAAAAGGATCAAGCTTGAGTACTAATCAAATTCATCCGGGTTATTCAAAATCAAAATTGGATGATAGTGCTAATGATAGCAAGGTGAAACAAAGCTGCTTGATCTGTGCAAAGCCGAGAAATGCTAATGAGGAATCTAGAGAAGAAGAATCTTCAAATGATGGTGATAAGAATCAGAATTCTCTAGCTATAGTACCAGTTGAGAAAGTAGAATCAGGATCAGGCTCTATCACTATGTTGATAAAAAAATTACCCGAAACAAGACCTGGCTGGCCGCTGCTTAGACGAAATGTTAGATCGGTCCGACAAGGTTCAAATCGATCGATCTCTGTAGTTGAGTGGGCCATGAGGTTACCTTGTAGGTCTAATGCTCAAAGCACCACTTTGGATAATCATGATCAATTATCTTCTAGTCTAGATGGAGAAAATGGCGCAATTGTCCCAGTTGATTCAGATTATGCATGCTCGACCCCTTCTCCTTTTCACAAATCAAGCTTACCAAAAGAATTAGATGGTCTTCATGAGAAGTACTTGTCCACTTGTAGATTGTTCAACTATGAAGAACTCATCTCAGCTACCTCAAATTTCTTAGCCGAGAATTTGGTTGGGAGAGGAGGAAGCAGTCAAGTATACAGAGGCTGTCTTCCGAATGGTAGGAAACTTGCAGTGAAGATACTGAAACCATCTGAAGATGTTTTGAAGGAGTTTGTTTTGGAGATTGAGATTATTACAGCCTTAAATCACGAGAACATTATCTCCCTTCTTGGTTTCTGTTTTGAGGACAACAATTTCTTGCTGGTTTATGATTTCTTATCAGGAGGAAGTCTTGAAGAGAACCTTCATGGTAATAAGAAAGACCCACTTGCATTTGGTTGGAATGAAAGATGTAAAGTGGCTCTTGGCATAGCTGAGGCCTTAGATTATCTTCATAGTGACAGTTCTCGACCCATTATTCATAGAGATGTCAAATCTTCAAATATTTTGTTGTCAGATGATTTTGAGCCTCAGCTTTCGGACTTTGGGCTTGCAAAATGGGCATCAACCTCATCGTCCCATATAACCTGCACTGATGTTGCAGGGACATTCGGTTACTTGGCTCCAGAATATTTCATGTACGGGAAAGTAAATGAGAAGATTGATGTCTATGCATTTGGGGTAGTGCTCCTTGAACTTCTTTCAGGACGAAAACCAATAAGCTCTGATTCTCCGAAAGGCCAAGAGAGCTTAGTTATGTGGGCAAGACCGATTCTAGATGGTGGGAAGGTTTCCGAATTATTGGACCCGAGCTTGGGTGATAATTACAATCAGGCTCAAATGGAGAGGATGGTTTTAGCGGCTAGTCTATGCATCCAACCTTCCCCCAGAGCTAGACCTCAAATGAGCCTAGTTCTGAAGCTCCTAAGAGGGGATCCAAACGTAACCATGTTGGCCCGGCTACAACTTAACGCCATTGAAGATTCAGAGATGGTAGAATATGGTGAAACATGTCCACGTTCTCATCTCCAGTCGCATCTCAACCTTGCATTGCTTGATGTGGAGGATCACTCGATCTCCCTAAGCAGCATTGAGCACACCATCTCAATCAAGGAATACCTACAAGGCCGGTGCAGCCGATCTTCGAGTTTCGACTAA 2220 42.79 MKLLHNGVAGESEPAGSGGRKVVVGMKLDAQSRELLTWALVKVAEPGDLVIALHVLANDEIVNRDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGTSARKIIVREAESYSATNVIVGAAHNHHKLRPLTSVAKYCAQKLPKECWVLAINNGKIVFKREGSPSTIACSQGSEANHANGLLGAFNRSVSKTSKGSSLSTNQIHPGYSKSKLDDSANDSKVKQSCLICAKPRNANEESREEESSNDGDKNQNSLAIVPVEKVESGSGSITMLIKKLPETRPGWPLLRRNVRSVRQGSNRSISVVEWAMRLPCRSNAQSTTLDNHDQLSSSLDGENGAIVPVDSDYACSTPSPFHKSSLPKELDGLHEKYLSTCRLFNYEELISATSNFLAENLVGRGGSSQVYRGCLPNGRKLAVKILKPSEDVLKEFVLEIEIITALNHENIISLLGFCFEDNNFLLVYDFLSGGSLEENLHGNKKDPLAFGWNERCKVALGIAEALDYLHSDSSRPIIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNEKIDVYAFGVVLLELLSGRKPISSDSPKGQESLVMWARPILDGGKVSELLDPSLGDNYNQAQMERMVLAASLCIQPSPRARPQMSLVLKLLRGDPNVTMLARLQLNAIEDSEMVEYGETCPRSHLQSHLNLALLDVEDHSISLSSIEHTISIKEYLQGRCSRSSSFD 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6507785 6511598 - Conep17aG0083600.1 Cone17ag0817 456294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0817 739 Gene3D HUPs 19 156 IPR014729 -
Cone17ag0817 739 Gene3D Phosphorylase Kinase; domain 1 362 466 - -
Cone17ag0817 739 MobiDBLite consensus disorder prediction 237 251 - -
Cone17ag0817 739 MobiDBLite consensus disorder prediction 195 212 - -
Cone17ag0817 739 CDD STKc_IRAK 398 663 - -
Cone17ag0817 739 PANTHER OS08G0249100 PROTEIN 75 707 IPR046958 -
Cone17ag0817 739 FunFam Putative receptor-like serine/threonine-protein kinase 467 679 - -
Cone17ag0817 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0817 739 ProSiteProfiles Protein kinase domain profile. 392 669 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0817 739 ProSitePatterns Protein kinases ATP-binding region signature. 398 420 IPR017441 GO:0005524(InterPro)
Cone17ag0817 739 SMART serkin_6 392 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0817 739 SUPERFAMILY Protein kinase-like (PK-like) 373 663 IPR011009 -
Cone17ag0817 739 Pfam Universal stress protein family 20 152 IPR006016 -
Cone17ag0817 739 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 361 466 - -
Cone17ag0817 739 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 154 - -
Cone17ag0817 739 CDD USP_Like 21 147 - -
Cone17ag0817 739 MobiDBLite consensus disorder prediction 195 219 - -
Cone17ag0817 739 Gene3D Transferase(Phosphotransferase) domain 1 467 674 - -
Cone17ag0817 739 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 19 156 - -
Cone17ag0817 739 MobiDBLite consensus disorder prediction 236 258 - -
Cone17ag0817 739 Pfam Protein kinase domain 395 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0817 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1257 Cone-Chr12:9668871 Cone17ag0817 Cone-Chr17:6507785 1.43E-70 dispersed
Cone17ag0817 Cone-Chr17:6507785 Cone9ag1223 Cone-Chr9:8913265 3.02E-252 dispersed
Cone8ag1313 Cone-Chr8:10666491 Cone17ag0817 Cone-Chr17:6507785 7.37E-39 dispersed
Cone8ag0522 Cone-Chr8:3737160 Cone17ag0817 Cone-Chr17:6507785 1.56E-48 transposed
Cone17ag0817 Cone-Chr17:6507785 Cone20ag0422 Cone-Chr20:2066692 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
Vvi18g1149 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . Cpe13g00644 Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . . . . . . . . . . . . . . . . . Car04g02316 . Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82266 PF10494 Stk19 7.90E-47 No_clan Cone PK