Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0818 ATGGTCTGCCATTGTAAACCACATCAAGATGGCCAGTTGGGTTGTGGAGAAGAATGCCTGAACCGAATGCTTAATATTGAATGTGTTCGAGGCACCTGCCCTTGTGGAGATCATTGTTCTAATCAACAGTTCCAGAAACGAAAATATGCCAAACTGGAGTGGTTTCGTAGTGGAAAGAAGGGATATGGGCTACAGTCAACTGTAGATATATCACAAGGACAATTTCTCATTGAATATGTTGGAGAGGTGCTTGATATGCATTCTTATGAGGCACGTCAGAAAGAGTATGCTCTGAATGGTCATCGACATTTCTACTTCATGACATTGAATGGCAGTGAGGTTATTGATGCCTGTGCAAAAGGAAATTTGGGGCGTTTCATTAACCACAGCTGTATGCCCAATTGCCGCACCGAGAAGTGGATGGTGAATGGAGAGATATGCATTGGTCTATTTGCATTAAGGAATATTAAGAAGGGTGAAGAGGTGACGTTCGACTACAACTACGTGAGGGTATTTGGGGCTGCTGCTAAAAAGTGTTACTGTGGTTCTTCTCAATGTCGAGGTTATATAGGTGGGGATCCACAGGATTCCGAAGTCATTGTGCAAAGTGATTCAGATGAAGAATTTCCTGAACCTGTGATACTTGGAGAAAATGGTAAAATGGGACATAGCAAGTCAAAAAGAGCTACTATTTCTGATCATGTTGAAATGCATACAGTAGGGAGCATAACTGAGGCTAAAGATAAAATAGATCAATCTATCACTGCCATCCGGCAGTTGGATATAAAGGCAGAGAGAGAGGATCCTTCGAACCAATCTTCTTCTACTCTTACCCAACTACACAGCTCATTGGAATTTGAGGACTCGAAGGCAAAAGAATCATCATTTATTCAACCACATGAAAGTTTCCAACAAACAGAGGATGTGACAAGCAAACCCATGACTTTTGTGGAGCAGGACATTTCTACTTTAGAGGCGACTTCCGAGAAAAGGTTATACTCCGGTGAAAGAGTAGGGAGTTCTTGTCCTCCGGTACTTGACGAAACGTTAACTAATGGCACTGACTCTGATCGAAAGTCTAAGTCAGATACTATTGAAGACAAGCAAGTGTGTTCCAAAAAATTTCCCCGTGTGAAAACTTCCTGTATAGAAGGTTCTTATAGGAAAGTAAAAGTTGATAGTAATTCCTTAAATGTTAAGAAATTTAAGGTGGCATCCATTAAGTCACACACATTGTCTATCAAACCCAAAAAATTGATGGAAGGAACTCCCAGCCGCTTTGAAGCAGTTGAGGGGAAACTTAATGAGCTACTGGATGCTGAGGGGGGGATAAGCAAAAGAAAAGATGCCCCTAAAGGCTACTTGAAGCTTCTTCTTCTCACAGCGGCATCAGGCGATAGTGGCAATAGTGAAGCAATACAGAGCAATCGTGATCTTTCCATGATCCTTGATGCAATTTTGAAGACAAAATCACGAGTGGTTCTAATCGATATTATAAGCAAAAATGGTCTGCAGATGCTACACAAGATGATGAAGCAGTACAGAAGGGACTTCAAAAAGATTCCTATACTCCGGAAGCTTCTCAAGGTCTTTGAGTATATGGCAGTGAAGGAGATCCTAACATCAGAACAGATTACTGAGGGCCCACCTTATCCAGGAATGGAGAGTTTTAGGGAGTCAATACTGTCCCTGACAGAGCACAATGACAAACAGGTCCATCAAATAGCCCGAAAATTTCGAGATAGATGGATCCCTAGGCCTCTCAGGAAAATTGGCGATGGCAGGATGGATATTCACAGGCCTCCAAACTGTAGTAGGTTCACAGCACAAAAGAGCCATCAACATGAACAGGATATAAAACCAACAGAAGCAATAGACTTACTGAAGCAATCAATGCCTCCTACCTTGGCAGTAGATCCTCCTATCCCAGGAAGCAGTTCTGAGGCTCAGACTAGTGGTGACAAAAATAATGGAACTACAATTCGTAAAAGAAAGAGCCGATGGGATCAGCCAGCAGATCCCAATAAAGCACTGAAGGTTGAGTCTAGTGGTCAAGTGATGCTTGAATTAGTAAACAAGGTAAAGAGGGAGGAGACGAGCTCCTCTTTCTCAAGTCTCTATATGCAGCAAGGTGAAGCTATGATGATTGACAATAGAGAACAGAATATCCATGATGATGGCCCACCTGGATTTTCATCTATCCCTGAGGATGCTCCACCTGGATTTTCATGCCCCCTTATATCCCATCCGGTTTCCGCAAATGCTTCAACTACTACTACCTCTATTGGGTATCTACAGGAGAGATTTATTTCTCGCCTGCCAGTCTCTTATGGGATTCCATTGTCTACCGTGCAGCAATTTGGAATACCAGAACATGAAAATTCGGAAACCTGGACTATTGCTCCAGGAATACCTTTTCATCCCTTTCCACCATTACCCCCATATCCATTGGGTAAAAAAACCCATCCATATTGTGATGCTATAATCAATCAATCCTTGGAAGAAGGGAAAAGGGACAGCATTGAAACTCACTTATGTAATTATTCGGATGATACCTCTCCTAGTACCAGTGCTGACCAATCTGATATGAATACGTCATCTGCTAGCAACCATGACATATTGAAATCGCTCAAGGAGTTGTCAACTGATTTGGGAAAAAGGTATTTCAGGCAGCAAAGGCGGAATAGTCCAAAGGCAGGTCCCCCATGGAAAAGGAATCTGTGGGGACATCCTTACTCGAGAAGTAATGGTAATGTAGCAAATGAGAACAGAAGCTCATGTTGTGAAGACAAAGTAAGCTATAAAGGGGACAATCCGGGGAGTGATATTTATCATCATACACAGAACCAAAATCAGAAATGA 2862 42.24 MVCHCKPHQDGQLGCGEECLNRMLNIECVRGTCPCGDHCSNQQFQKRKYAKLEWFRSGKKGYGLQSTVDISQGQFLIEYVGEVLDMHSYEARQKEYALNGHRHFYFMTLNGSEVIDACAKGNLGRFINHSCMPNCRTEKWMVNGEICIGLFALRNIKKGEEVTFDYNYVRVFGAAAKKCYCGSSQCRGYIGGDPQDSEVIVQSDSDEEFPEPVILGENGKMGHSKSKRATISDHVEMHTVGSITEAKDKIDQSITAIRQLDIKAEREDPSNQSSSTLTQLHSSLEFEDSKAKESSFIQPHESFQQTEDVTSKPMTFVEQDISTLEATSEKRLYSGERVGSSCPPVLDETLTNGTDSDRKSKSDTIEDKQVCSKKFPRVKTSCIEGSYRKVKVDSNSLNVKKFKVASIKSHTLSIKPKKLMEGTPSRFEAVEGKLNELLDAEGGISKRKDAPKGYLKLLLLTAASGDSGNSEAIQSNRDLSMILDAILKTKSRVVLIDIISKNGLQMLHKMMKQYRRDFKKIPILRKLLKVFEYMAVKEILTSEQITEGPPYPGMESFRESILSLTEHNDKQVHQIARKFRDRWIPRPLRKIGDGRMDIHRPPNCSRFTAQKSHQHEQDIKPTEAIDLLKQSMPPTLAVDPPIPGSSSEAQTSGDKNNGTTIRKRKSRWDQPADPNKALKVESSGQVMLELVNKVKREETSSSFSSLYMQQGEAMMIDNREQNIHDDGPPGFSSIPEDAPPGFSCPLISHPVSANASTTTTSIGYLQERFISRLPVSYGIPLSTVQQFGIPEHENSETWTIAPGIPFHPFPPLPPYPLGKKTHPYCDAIINQSLEEGKRDSIETHLCNYSDDTSPSTSADQSDMNTSSASNHDILKSLKELSTDLGKRYFRQQRRNSPKAGPPWKRNLWGHPYSRSNGNVANENRSSCCEDKVSYKGDNPGSDIYHHTQNQNQK 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6522515 6528912 - Conep17aG0083700.1 Cone17ag0818 456295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0818 953 FunFam Histone-lysine N-methyltransferase 1 205 - -
Cone17ag0818 953 MobiDBLite consensus disorder prediction 846 871 - -
Cone17ag0818 953 CDD SET_SETD2 49 191 IPR044437 GO:0046975(InterPro)
Cone17ag0818 953 PANTHER SET DOMAIN PROTEINS 1 826 IPR050777 GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0046975(PANTHER)
Cone17ag0818 953 MobiDBLite consensus disorder prediction 845 871 - -
Cone17ag0818 953 MobiDBLite consensus disorder prediction 289 309 - -
Cone17ag0818 953 SMART PostSET_3 175 191 IPR003616 -
Cone17ag0818 953 ProSiteProfiles Post-SET domain profile. 175 191 IPR003616 -
Cone17ag0818 953 MobiDBLite consensus disorder prediction 911 927 - -
Cone17ag0818 953 Pfam AWS domain 12 47 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Cone17ag0818 953 ProSiteProfiles SET domain profile. 50 167 IPR001214 GO:0005515(InterPro)
Cone17ag0818 953 MobiDBLite consensus disorder prediction 332 365 - -
Cone17ag0818 953 SUPERFAMILY SET domain 2 188 IPR046341 -
Cone17ag0818 953 SMART shorttest3 1 49 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Cone17ag0818 953 MobiDBLite consensus disorder prediction 658 674 - -
Cone17ag0818 953 Gene3D SET domain 1 208 IPR046341 -
Cone17ag0818 953 MobiDBLite consensus disorder prediction 206 225 - -
Cone17ag0818 953 ProSiteProfiles AWS domain profile. 1 48 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Cone17ag0818 953 MobiDBLite consensus disorder prediction 633 681 - -
Cone17ag0818 953 MobiDBLite consensus disorder prediction 889 953 - -
Cone17ag0818 953 Pfam SET domain 61 167 IPR001214 GO:0005515(InterPro)
Cone17ag0818 953 SMART set_7 50 173 IPR001214 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0818 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0818 Cone-Chr17:6522515 Cone20ag0367 Cone-Chr20:1668039 1.72E-50 dispersed
Cone17ag0818 Cone-Chr17:6522515 Cone20ag0423 Cone-Chr20:2080667 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
Vvi18g1102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0818 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45059 PF10494 Stk19 5.20E-27 No_clan Cone TR