Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0840 ATGTCTGGAAAAAGTGAGCATCATTCTGTCCCACTTTCGGTGTTGCTTAAGCGTGAATCGGCTTGTGAAAAGATTGAGAGACCCGAGCTCTTACATGGTCAGGCAAATCAAAGTAAAAAGGGGGAGGATTTTACCTTACTCAAGACCGAATGCCAAAGAGTGGTGGGAGATGGAGTCTCCACGTTTTCTGTTTTTGGACTATTCGATGGACACAATGGGTCTGCAGCAGCAATTTATTCTAAGGAGAATCTATTGAACAATGTTCTAGCGGCCATTCCTTCAGATCTTAACAGAGAGGAATGGGTAGCAGCATTACTACGGGCTTTGGTTGCAGGCTTTGTAAAGACAGACATAGATTTTCAAGAAAAATGTCAGAAATCTGGTACAACCGTCACTTTCATGATTATAGAAGGATGGGTCATTACTGTTGCTTCTGTTGGTGATTCCCGTTGCATATTAGAGTCTGCTGAAGGTGGTATAACTTACTTGTCAGCCGATCATAGACTTGATTGCAATGAAGAAGAGAGAGACCGTATTGTTGCTAGTGGTGGTGAGGTGGGTCGACTCAATACTGGTGGTGGTACAGAGATTGGTCCCTTAAGATGTTGGCCTGGTGGTTTGTGTTTATCACGAAGCATTGGTGATATGGATGTAGGTGAATATATTGTTCCTGTTCCCCATGTAAAGCAAGTGAAGCTGCCTACAACGGGTGGTAGGGTCATTATCTCAAGCGATGGTGTTTGGGATGCTTTATCAGCAGAAACAGCATTTGAGTGCTGTCGTGGGATGCCTGCTGAAACTGCTGCTGCAGAGATTGTGAAAGAAGCTTTACAGGCGAATGGGCTTCGAGATGATACTACATGCGTCGTTATTGATATATTACCCCAGCAAAAAACAATGGCTCCTTTGCTACCACCAAAGAAGCAAGGAAAAGGAATCTTTAAATTCATGTTCCTTAAAAGGCCTGATGAACCATCTTCTCCTGTTGAAAAAGAATACATGGAGCCAGATGTGCTGGAGGAACTGTTTGAAGAAGGCTCTGCTTTGCTTTCCGAAAGGTTTGACACGAAGTATCCACTCTGCAATCTTTTCAAGATGTTTATATGTGCAGTCTGCCAAGTAGAAATAAAACCCGAAGAGCGTATTTCAATACATAGTTCTAACCATGGAAAAGTGCGTCCCTGGGATGGCCCTTTCTTGTGCTTGAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAATATCAGCAGGAGATAA 1260 43.33 MSGKSEHHSVPLSVLLKRESACEKIERPELLHGQANQSKKGEDFTLLKTECQRVVGDGVSTFSVFGLFDGHNGSAAAIYSKENLLNNVLAAIPSDLNREEWVAALLRALVAGFVKTDIDFQEKCQKSGTTVTFMIIEGWVITVASVGDSRCILESAEGGITYLSADHRLDCNEEERDRIVASGGEVGRLNTGGGTEIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPHVKQVKLPTTGGRVIISSDGVWDALSAETAFECCRGMPAETAAAEIVKEALQANGLRDDTTCVVIDILPQQKTMAPLLPPKKQGKGIFKFMFLKRPDEPSSPVEKEYMEPDVLEELFEEGSALLSERFDTKYPLCNLFKMFICAVCQVEIKPEERISIHSSNHGKVRPWDGPFLCLSCQEKKEAMEGKNISRR 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6701476 6705322 + Conep17aG0085900.1 Cone17ag0840 456317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0840 419 ProSiteProfiles PPM-type phosphatase domain profile. 24 293 IPR001932 -
Cone17ag0840 419 FunFam probable protein phosphatase 2C 12 32 299 - -
Cone17ag0840 419 SUPERFAMILY PP2C-like 36 293 IPR036457 -
Cone17ag0840 419 Pfam Protein phosphatase 2C 53 278 IPR001932 -
Cone17ag0840 419 SMART PP2C_4 18 291 IPR001932 -
Cone17ag0840 419 ProSitePatterns Zinc finger C2H2 type domain signature. 369 389 IPR013087 -
Cone17ag0840 419 PANTHER PROTEIN PHOSPHATASE 38 292 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone17ag0840 419 CDD PP2Cc 39 293 IPR001932 -
Cone17ag0840 419 Gene3D - 32 301 IPR036457 -
Cone17ag0840 419 SMART PP2C_SIG_2 46 293 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0840 Cone-Chr17:6701476 Cone1ag1537 Cone-Chr1:57335055 2.55E-165 dispersed
Cone17ag0840 Cone-Chr17:6701476 Cone20ag0184 Cone-Chr20:794121 2.68E-292 wgd
Cone17ag0840 Cone-Chr17:6701476 Cone4ag1564 Cone-Chr4:12007728 4.78E-242 wgd
Cone17ag0840 Cone-Chr17:6701476 Cone7ag1386 Cone-Chr7:9975888 2.88E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0840 - - - 0.0