Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0842 ATGTACGCGGTGGGGAGGATAGGGAGCTATATTACGCAAGGAGTGTACACAGTTTCTGGGCCATTTCATCCTTTTGGAGGAGCTGTGGACATAATCGTAGTCCAGCAGCAAGACGACAGTTTCAAATCCTCGCCATGGTATGTTCGATTCGGGAAATTTCAAGGTGTTCTAAAGGCGAAAGAGAAAGTGGTTAAGATAAGCGTTGATGGAGCAGAAGCTAATTTCCATATGTATTTGGATAATAAGGGTGAAGCTTTCTTTCTAAAAGAGCCTGATGCTGAAGCAGAAGAATCTGTACCATATTCTTCTTCTTCACCATCTTCTTCTTCAAGTGATGATACAGATTCTGCTCAGTCACGGGACAAGAGGAGGCCTGTTAAGTCGAAAAGTTGCAATTATGATTCTGGTAATTCGATTGAGAAGAGTAATGGGAAGATATTGGCTAGTCCCCGGAGGTCTCGCATACCCGGGTTTGTTTTCGGAAGACAGTCGATGAAGAAATTCGGTTATCGGGATGATGGGATTGGTGGTGCTGAAGTGGCATGCTCTGAATCGCTAGAACGAGCTGAAATTGCGGCCGATCTTTTGGAGTTGAAGTGGTCTACCAATCTTGTTACTAGTAAGAACGGGAAATACAATGCGTCATCTTTTTCTGCCAATGCCAAAGACTTATATGTTAAGACTGACATTGACATTGAAACTGTGGAGGCTTCCATAATAGTTGAGAATGATGAACAAGATGTGAATGCTAAGGGAGTTATTTCTCTTATCACAAGTTCTGATTCTCAAATGGAACTACCATCTGAGTTGAGTCTGGATTTATCCGACCCTGAGGTGTTAGAAGTTCTTCATCAGGACACGGTTAATGAGAGAGCAGGCGAGGATATTGATCTAGAGACAAAGGATGTATGCAATGCGCTTGACCAAACACTGTCAGAATCTGATTGTCGAGTCATCACAGGGGACCAAACAGCAAGTTCGGTTGAAGAGGTTGAGTCAGATAACATAAGCACGTTTTGCAGGAGCTCTGACTCGATTCTTCAAATTCAAAAAGAGGAAAGTATGAGGGATGAAGCTATCACGAGCAAGTTGCCGAATTCCTTGGAGTCAGATGAAGAACAATTCATTTTCACTGACATTGATGAATTTAAAGCCAAAGAGATTGTTCAGCATGTGGAATCAAATGGTCTGGAATTTGTTGATCCCTTGGTTCATGAAGTAGTAAATGATGAGCCATATGCTTCTATAGATGAGCCTACCTGTCCCATGTCAATTCCGGAAATCCGTAAGGCTGCCGATGAAGATCCCGGAAGGCTGGTAGCATCATTACCCAATATGCAGTCTTGTCTTGGTGATGTGGCGGCAGATAATGTTCTTCTTCACCCACTCAGCCATTCTTTGGACTCGAGTTTCAAACCATTAGAAGGAACGAGCCTCAGAAAAGATGATCCGAGCTGTAAATCTGATGGAGACAAAGAACGGAAAATGGAACAGGAACATCTGAACATTGAAGCATCCCATGTTTCAATTGCTAATTTTGCAGTTGGAGATCCATCAGAAGCAACTGTTGTGGTTCATGGAAACTGGAGATTTTGGCCTTTCTCTATGAGGAGATCAAAATCCCATAGAGCAATGGAAACAGGTCTTGATGATGTTAAAATTTCTGACACTGATAATGCTTCAAAGGGAGAAATTGGCATGGAAGGAGATACAAAAATATTTACGGGCAAGGAAGAAAAAAAGATGGCAAGGACAAACATCCCAACATCTGAGCAGCTGGCATCCTTGAATCTTAAGGAAGGGAGAAACACAGTCACCTTCACCTTCTCCACCGCAATGCTAGGGAAGCAGCAGGTTGACGCTAGGATTTATTTGTGGAAATGGAACAGTCGGATAGTAATCTCAGACGTAGATGGGACAATTACAAAGTCAGATGTTCTTGGCCAATTCATGCCCTTGGTTGGAGTAGATTGGTCACATATAGGCGTTGCACATTTGTTTTCTGCTATCAAGGAGAATGGGTACCAGATGCTTTTTCTTAGTGCACGTGCAATATCTCAGGCCTACCACACTAGACAATTCCTGTTCAATCTTAAGCAGGATGGGAAGGCTTTACCGGAAGGCCCTGTTGTTATCTCCCCTGATGGGCTATTCCCTTCTTTATATCGAGAAGTCATTAGGAGGGCCCCTCATGAGTTCAAGATTGCATGCTTAGAGAGAATTAGGGAATTATTCCCTCCAGATTGCAATCCATTCTATGCGGGGTTTGGAAACCGAGATACTGATGAAATTAGCTATGTTAAGGTTGGAATCCCGAGAGGAAAAATCTTCATCATCAATCCCAAGGGTGAAGTTGCTGTAAACCATCGTGTTGACAAACAATGTTATCCTTCCCTTCATGCTCTTGTGAATGGCATGTTTCCCCCTGCGGCGTCTTTTGAGCAGGAGGATTATAATTCATGGAATTTCTGGAAACTGCCTCTAGTGGATATATGA 2496 42.95 MYAVGRIGSYITQGVYTVSGPFHPFGGAVDIIVVQQQDDSFKSSPWYVRFGKFQGVLKAKEKVVKISVDGAEANFHMYLDNKGEAFFLKEPDAEAEESVPYSSSSPSSSSSDDTDSAQSRDKRRPVKSKSCNYDSGNSIEKSNGKILASPRRSRIPGFVFGRQSMKKFGYRDDGIGGAEVACSESLERAEIAADLLELKWSTNLVTSKNGKYNASSFSANAKDLYVKTDIDIETVEASIIVENDEQDVNAKGVISLITSSDSQMELPSELSLDLSDPEVLEVLHQDTVNERAGEDIDLETKDVCNALDQTLSESDCRVITGDQTASSVEEVESDNISTFCRSSDSILQIQKEESMRDEAITSKLPNSLESDEEQFIFTDIDEFKAKEIVQHVESNGLEFVDPLVHEVVNDEPYASIDEPTCPMSIPEIRKAADEDPGRLVASLPNMQSCLGDVAADNVLLHPLSHSLDSSFKPLEGTSLRKDDPSCKSDGDKERKMEQEHLNIEASHVSIANFAVGDPSEATVVVHGNWRFWPFSMRRSKSHRAMETGLDDVKISDTDNASKGEIGMEGDTKIFTGKEEKKMARTNIPTSEQLASLNLKEGRNTVTFTFSTAMLGKQQVDARIYLWKWNSRIVISDVDGTITKSDVLGQFMPLVGVDWSHIGVAHLFSAIKENGYQMLFLSARAISQAYHTRQFLFNLKQDGKALPEGPVVISPDGLFPSLYREVIRRAPHEFKIACLERIRELFPPDCNPFYAGFGNRDTDEISYVKVGIPRGKIFIINPKGEVAVNHRVDKQCYPSLHALVNGMFPPAASFEQEDYNSWNFWKLPLVDI 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6710075 6714731 + Conep17aG0086100.1 Cone17ag0842 456319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0842 831 MobiDBLite consensus disorder prediction 130 144 - -
Cone17ag0842 831 Pfam lipin, N-terminal conserved region 4 104 IPR007651 -
Cone17ag0842 831 Pfam LNS2 (Lipin/Ned1/Smp2) 586 808 IPR013209 -
Cone17ag0842 831 SUPERFAMILY HAD-like 624 775 IPR036412 -
Cone17ag0842 831 MobiDBLite consensus disorder prediction 471 495 - -
Cone17ag0842 831 MobiDBLite consensus disorder prediction 98 114 - -
Cone17ag0842 831 MobiDBLite consensus disorder prediction 115 129 - -
Cone17ag0842 831 PANTHER LIPIN 526 831 IPR026058 GO:0008195(PANTHER)|GO:0044255(PANTHER)
Cone17ag0842 831 MobiDBLite consensus disorder prediction 475 495 - -
Cone17ag0842 831 SMART lns2 632 788 IPR031315 -
Cone17ag0842 831 MobiDBLite consensus disorder prediction 97 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0842 K15728 - - mdm:103421196 768.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0279 Cone-Chr10:1332074 Cone17ag0842 Cone-Chr17:6710075 3.59E-170 dispersed
Cone17ag0842 Cone-Chr17:6710075 Cone3ag0310 Cone-Chr3:1579345 1.09E-171 dispersed
Cone17ag0842 Cone-Chr17:6710075 Cone20ag0186 Cone-Chr20:801830 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g778 Blo01g01534 . . . Bpe02g00423 . . Bma01g02284 Cmo05g00189 Cmo12g00473 . . . Car12g00499 Sed11g0970 . Cpe07g00473 Bhi04g00335 Tan02g1871 . . . . Lcy13g2049 Cla08g01556 Cam08g2051 Cec08g1628 Cco08g1761 Clacu08g1737 . Cre08g1523 . . Cone17ag0842 Cone20ag0186 . . . Cme03g02024 Blo17g00849 . Bda08g01343 . . Bpe05g00055 . . . . . Cma12g00531 Cma05g00190 Car05g00160 . Cpe11g00159 . . . . . . . . . . . . . . . Lsi08g01459 Csa02g01979 Chy03g01528 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006092 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38