Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0844 ATGGGATCTTCCAACATTTCTGGGCCCCGCCTTATCAAAATCGAAGGCGGGTATAATAATTTTTCTGCAGCGTCGAGTTTTGGCTACGAATTAGGGTTTCTGATTGCTGTAATGCCGCCATTCTTATCGCCCGCGAAGGTTGTCCGTTCCTTGTTATCCTGTAGTAAACGAATCGGAGGGGTGGCAAAGAGCAGCAAATTCGACGAGCAGATATGGAAATCCAATCAGATTCGATGGATTGGAAGTATTGCCGGCGGTGAGACCTCATTGTTTCGTGGGTTGGGCACTAACCAGCCGGATTGTAAATTATTGTTGTCGAGTTTGTGTGATAGCAATTCTATTCAGAAGAGATGGTTTTTTAGCCGCGGAGGTGGCGAAGAAGGCAATGTCTTAGCCAAAGTTTATGAAGAGAGGCTCGTTCTAGGGTATTCTCCAGAGCAGTTATTTGAAGTGGTTGCAACTGTTGACTCGTATCATGGTTTTGTTCCCTGGTGTCAACGATCTGAGATCATTAAACAGCATCCAGATGGATCATTCGACGCAGAGCTGGAGATTGGTTTTAAGTTTCTCATCGAAAGTTACGTTTCACATGTTGAATTAAACAGACCGAATTCTGTGAAGACTACTGTGTTAAAGAGTACTCTTTTTGACCACTTGATAAACATTTGGGAATTCAGTCCTGGACCATTCCCGGGATCTTCCAACGTCCACTTTTTGGTGGATTTTAAGTTTCAATCACCACTCTATAGACAGGTAGCATCTGTGTTCTTTAAGGAGGTTGTCTCGCAACTGGTTGGTGCGTTTAGTGCACGTTGTCATTCAATATACGGACCGGGGGTACCTATTCTCGAGAAATCACATGGTCAAAGCAGTTGA 876 44.18 MGSSNISGPRLIKIEGGYNNFSAASSFGYELGFLIAVMPPFLSPAKVVRSLLSCSKRIGGVAKSSKFDEQIWKSNQIRWIGSIAGGETSLFRGLGTNQPDCKLLLSSLCDSNSIQKRWFFSRGGGEEGNVLAKVYEERLVLGYSPEQLFEVVATVDSYHGFVPWCQRSEIIKQHPDGSFDAELEIGFKFLIESYVSHVELNRPNSVKTTVLKSTLFDHLINIWEFSPGPFPGSSNVHFLVDFKFQSPLYRQVASVFFKEVVSQLVGAFSARCHSIYGPGVPILEKSHGQSS 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6735176 6737381 - Conep17aG0086300.1 Cone17ag0844 456321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0844 291 CDD COQ10p_like 135 275 IPR044996 GO:0045333(InterPro)|GO:0048039(InterPro)
Cone17ag0844 291 PANTHER SPERM PROTEIN HOMOLOG 38 285 IPR044996 GO:0045333(InterPro)|GO:0048039(InterPro)
Cone17ag0844 291 SUPERFAMILY Bet v1-like 135 277 - -
Cone17ag0844 291 Gene3D - 133 278 IPR023393 -
Cone17ag0844 291 Pfam Polyketide cyclase / dehydrase and lipid transport 142 268 IPR005031 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0844 K18588 - - csv:101214157 310.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0844 Cone-Chr17:6735176 Cone20ag0191 Cone-Chr20:825357 3.31E-164 wgd
Cone17ag0844 Cone-Chr17:6735176 Cone4ag1575 Cone-Chr4:12065984 1.87E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g764 Blo01g01530 Blo12g00957 Bda01g00566 . Bpe02g00427 . . Bma01g02276 . . Cma01g01839 Cma09g00228 Car01g01433 . . Cpe06g00159 . . . . . . . . . . . . . . . Cone4ag1575 . Cone17ag0844 Cone20ag0191 . Csa04g02407 . . . . . . . . . . . Cmo01g01898 Cmo09g00220 . . . Car09g00196 . . Bhi09g03327 . . . Hepe01g1761 Mch11g0287 . . . . . . . . . . Chy07g00131 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008704 0 1 2 1 0 1 2 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 0 1 4 0 1 34