Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0849 ATGTCCGGTTTTGCATTTTTGAACGACCAGCTAACAAATAAGACATCCCTCTTCGGTTTACAATTATGGGTCGTTCTGGGTATAAGCGTAGGAGCAGCCATAGTGGTAGTCATCTTCCTGATATCGCTCTGGTTCACTTCCAAACGTAACAACAACTCATCAAAAACCAACTCTTCTGTCACCCCAAACGTCTCCAATGAAATCCAGGAAATCCGAATGGACCCGGTTTCCAATACCAGTTGGGATAAACCCGAACAGAATCATCTGTCCTCTGTGCTTCAGCCAGAGGAGGAAAGCCAGCATGCAAGTGGGCCCCATGGGATTTCTCATTTGGGCTGGGGCCAGTGGTTTACTCTCAGGGAGCTTGAGTATTCTACAAATGGATTTTCAGATGAGAATGTAATTGGAGAAGGTGGTTATGGGATTGTATACAGAGGCGTTTTAGAAGACGATACTGTTATTGCTGTCAAGAATTTGCTCAATAACAGGGGACAAGCTGAGAAGGAGTTTAAGGTTGAAGTCGAAGCAATTGGTCGTGTTTGGCATAAAAATCTAGTCCGATTGCTCGGTTATTGTGCTGAAGGAACTAAGAGGATGCTTGTTTATGAATATGTTGATAATGGGAACTTGGAACAATGGCTTCATGGAGATGCTGGCCTTTCTACTCCACTTACGTGGGATATTCGTATGAATATAATTCTCGGAACGGCTAAAGGGTTGGCATATCTCCACGAGGGTCTTGAGCCCAAAGTTGTTCACCGTGACATAAAGTCGAGCAACATCTTGCTCGATAAGCAATGGCTTCCAAAAGTCTCCGACTTTGGCTTAGCAAAGGTCCTCGGCTCAGAGAGGAGCTACGTGACAACTCGGGTCATGGGAACATTTGGATATGTAGCTCCAGAATATGCTAATACGGGTATGTTGAATGAAAGAAGTGATGTGTATAGTTTTGGGATTCTTATAATGGAGACTATTTCGGGTAGGATCCCGGTCGATCATAGCCGCCCACCTGGAGAGGTGAACTTAGTTGAGTGGCTTAAGACAATGGTAACGAACCGGAACACGGAGGGAGTTGTGGATCAAAGGTTGTCTGAGTCGGACAAGCCATCTTCTCGGGCTCTTAAACGGGCTCTTTTAGTAGCATTGCGCTGTGTGGATCCCAGTGCTAAAAACAGACCCGGAATGGGTCATGTCGTTCATATGCTGGAAGCCAACAAGTTCCCTTTCCGAGAGGATCGTAGAGTTAGCAGGGAAGATGGACCGTTGAGGGTTGCAAGTGAATCAGGAGATAGTAGCGGGTATGAAAGTTTGGTTCCAACTCGTAGACACACTACGGAGGAAGCCATAATCTAA 1353 45.75 MSGFAFLNDQLTNKTSLFGLQLWVVLGISVGAAIVVVIFLISLWFTSKRNNNSSKTNSSVTPNVSNEIQEIRMDPVSNTSWDKPEQNHLSSVLQPEEESQHASGPHGISHLGWGQWFTLRELEYSTNGFSDENVIGEGGYGIVYRGVLEDDTVIAVKNLLNNRGQAEKEFKVEVEAIGRVWHKNLVRLLGYCAEGTKRMLVYEYVDNGNLEQWLHGDAGLSTPLTWDIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWLPKVSDFGLAKVLGSERSYVTTRVMGTFGYVAPEYANTGMLNERSDVYSFGILIMETISGRIPVDHSRPPGEVNLVEWLKTMVTNRNTEGVVDQRLSESDKPSSRALKRALLVALRCVDPSAKNRPGMGHVVHMLEANKFPFREDRRVSREDGPLRVASESGDSSGYESLVPTRRHTTEEAII 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6756706 6758827 - Conep17aG0086800.1 Cone17ag0849 456326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0849 450 MobiDBLite consensus disorder prediction 76 98 - -
Cone17ag0849 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0849 450 SUPERFAMILY Protein kinase-like (PK-like) 107 404 IPR011009 -
Cone17ag0849 450 MobiDBLite consensus disorder prediction 412 450 - -
Cone17ag0849 450 ProSiteProfiles Protein kinase domain profile. 129 410 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0849 450 FunFam Putative receptor-like serine/threonine-protein kinase 205 417 - -
Cone17ag0849 450 CDD STKc_IRAK 135 403 - -
Cone17ag0849 450 Pfam Protein kinase domain 130 400 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0849 450 PANTHER OS01G0323000 PROTEIN 6 418 IPR052232 -
Cone17ag0849 450 SMART serkin_6 129 409 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0849 450 Gene3D Transferase(Phosphotransferase) domain 1 205 417 - -
Cone17ag0849 450 ProSitePatterns Protein kinases ATP-binding region signature. 135 157 IPR017441 GO:0005524(InterPro)
Cone17ag0849 450 MobiDBLite consensus disorder prediction 76 106 - -
Cone17ag0849 450 Gene3D Phosphorylase Kinase; domain 1 97 204 - -
Cone17ag0849 450 FunFam Probable serine/threonine-protein kinase At1g01540 109 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0849 Cone-Chr17:6756706 Cone8ag1197 Cone-Chr8:10205338 3.14E-165 dispersed
Cone17ag0849 Cone-Chr17:6756706 Cone20ag0197 Cone-Chr20:847514 1.10E-34 wgd
Cone17ag0849 Cone-Chr17:6756706 Cone4ag1586 Cone-Chr4:12122766 5.31E-224 wgd
Cone17ag0849 Cone-Chr17:6756706 Cone7ag1363 Cone-Chr7:9883587 1.02E-223 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82267 PF00009 GTP_EFTU 1.10E-52 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0849 - - - 0.0