Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0853 ATGGGCGATCCACCACAGCCTAGAGCGACGTCGTTTTCACTCCCGCCGGGTTGTCGATTTTACCCCTCCGATGAACACCTCCTCAGCTACTACCTCACGGAGAAGAACAACAACGCCATTACCGACGCAGTGGACGACGGGACTATACACGGTTCTGATTTGATCAAAGAGCTCGACTTGTTCGATTACGATCCCTTCGAATTGCCTGATGGCGCGAGTTTCTCGTACGGTTATGGGGGAAGGAAGAGGCATTGGTTCTGCTACACGGTTAGGGTTTTGAAGGAGAGCAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGAGGAAGAACTCGAAGAGTGGTTATTGGAGAAAGACGGGAAAGGCGAGAGATGTGTCGAGTCGAGGAGGTATTGTTTTAGGGACGAGAACGAGCTTCGTCTTCTATTTAGGGAATTCGCCTAAAACCTCTGTTAAGACTGATTGGACTGTGTACCAGTATGCCCTAATTGATCAGCCTGAGGCTTTATTTGTTCTTTGCCGAATATTTGTGAGAGGTTGTGGGAGAAATATGATATTAGAGAATGGTTTGAACTCCTGTGGTGAAGAAAGTGTTTCAGCTGTAGTCCATGCCAGTATTCAATGTAATGGATTGAGTGGCCCTGTGGACGCTAGAATTCCTAATGGAAACTCTCTTGATTTGACGATTAAGATATCAAGACATGTTACTGATCTTGATGAGCGAATAGAGGTTAATAATGCTTCTGTGCCTGATAGAGGAGCGACATTGAATGATGACGTAGAAGATGATCTTGCCATTGTGGAGGGGGATTTCTTGGAGTTGGATGATCTTGTGGACTAG 840 47.02 MGDPPQPRATSFSLPPGCRFYPSDEHLLSYYLTEKNNNAITDAVDDGTIHGSDLIKELDLFDYDPFELPDGASFSYGYGGRKRHWFCYTVRVLKESRGGGGGGGGGRRKNSKSGYWRKTGKARDVSSRGGIVLGTRTSFVFYLGNSPKTSVKTDWTVYQYALIDQPEALFVLCRIFVRGCGRNMILENGLNSCGEESVSAVVHASIQCNGLSGPVDARIPNGNSLDLTIKISRHVTDLDERIEVNNASVPDRGATLNDDVEDDLAIVEGDFLELDDLVD 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6767561 6769585 - Conep17aG0087300.1 Cone17ag0853 456330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0853 279 Gene3D NAC domain 23 180 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone17ag0853 279 MobiDBLite consensus disorder prediction 97 118 - -
Cone17ag0853 279 PANTHER NAC TRANSCRIPTION FACTOR 56 12 182 - -
Cone17ag0853 279 Pfam No apical meristem (NAM) protein 15 162 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone17ag0853 279 ProSiteProfiles NAC domain profile. 14 178 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone17ag0853 279 SUPERFAMILY NAC domain 10 178 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0853 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0853 Cone-Chr17:6767561 Cone9ag0150 Cone-Chr9:661549 2.35E-20 dispersed
Cone17ag0853 Cone-Chr17:6767561 Cone20ag0199 Cone-Chr20:856873 1.25E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g741 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0853 Cone20ag0199 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010514 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45062 PF00009 GTP_EFTU 1.10E-52 CL0023 Cone TF