Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0854 ATGGGGAGCTGCAGCAGCATGAAGGTTCATCAGTACGCACGTGGATTCAGCTGGCCGGATCATCATGATCCACTTCCTTCCCTTACACTTAGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTCCCTAATAACGCAGACATTGCTACTACAACTCCTACTACTACTACTAGCATTGTTTCCTCTTTTGATCTTAAGAGCTTCATTCGGCCCGAAAGTGGCCCGAGAAAACCCGGATCTTCTAACGAGAATATTCGACAAGATTCTCCTCAGTCTCAAGTAGAAACGCTTCCTGGAGGGACGAGATGGAACCCTACTCAAGAGCAGATAGGGATACTGGAGATGCTTTATAGAGGAGGAATGAGAACTCCGAATGCACAACAAATCGAACAAATTACAGCACAACTTGGAAAGTATGGGAAAATTGAAGGCAAAAATGTGTTCTATTGGTTCCAAAATCACAAGGCGAGGGAGAGGCAGAAGCAGAAGCGGAATAGTCTCGGTCTCAGTCATAGTCCTCGAACCCCAACTGCGAGCTCCACCACCTCTGCCACCTCTATAACCACCACTATTAATACTTTCCACCCACTTGGGGGCGAAGATCAAGTGGTAGGTAGAGAGGAGGATAGTCCATATTACAAGAGAAAGTGCGGGAGCTGGGCATTCGAGTGTTTGGTAGGAGATAGTGGTGTTAATAGTAATGCATGTACAAAAGAGGACGGTGATAGAACTCTGCAACTCTTCCCTCTGCACCCAGAAGGAAGATGA 768 47.14 MGSCSSMKVHQYARGFSWPDHHDPLPSLTLSCKRLRPLAPKLPNNADIATTTPTTTTSIVSSFDLKSFIRPESGPRKPGSSNENIRQDSPQSQVETLPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSHSPRTPTASSTTSATSITTTINTFHPLGGEDQVVGREEDSPYYKRKCGSWAFECLVGDSGVNSNACTKEDGDRTLQLFPLHPEGR 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6775187 6776179 - Conep17aG0087400.1 Cone17ag0854 456331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0854 255 SUPERFAMILY Homeodomain-like 99 166 IPR009057 -
Cone17ag0854 255 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 255 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Cone17ag0854 255 MobiDBLite consensus disorder prediction 159 187 - -
Cone17ag0854 255 Gene3D - 100 167 - -
Cone17ag0854 255 MobiDBLite consensus disorder prediction 166 187 - -
Cone17ag0854 255 MobiDBLite consensus disorder prediction 69 105 - -
Cone17ag0854 255 FunFam WUSCHEL-related homeobox 4 100 167 - -
Cone17ag0854 255 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Cone17ag0854 255 ProSiteProfiles 'Homeobox' domain profile. 106 161 IPR001356 GO:0003677(InterPro)
Cone17ag0854 255 MobiDBLite consensus disorder prediction 77 105 - -
Cone17ag0854 255 CDD homeodomain 101 162 IPR001356 GO:0003677(InterPro)
Cone17ag0854 255 Pfam Homeodomain 101 160 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1247 Cone-Chr11:9321715 Cone17ag0854 Cone-Chr17:6775187 2.64E-26 dispersed
Cone17ag0854 Cone-Chr17:6775187 Cone5ag1190 Cone-Chr5:5384235 8.55E-25 dispersed
Cone2ag0760 Cone-Chr2:33453510 Cone17ag0854 Cone-Chr17:6775187 4.37E-24 transposed
Cone17ag0854 Cone-Chr17:6775187 Cone20ag0200 Cone-Chr20:860496 2.23E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45063 PF04140 ICMT 4.50E-28 CL0115 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0854 - - - 0.0