Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0855 ATGGAAGGGGAATGTTGCTCGACAAGGAGAATCGTCCCAGAAGAGAAGAGGAAGCCACAAGAGAAGCCATATAGAGGAATAAGGATGAGGAAGTGGGGTAAGTGGGTGGCTGAGATTAGAGAGCCAAACAAGAGGTCTAGGATTTGGTTAGGCTCCTACACCACGCCGATAGCCGCTGCTCGAGCCTACGACACGGCAGTGTTCTATCTCCGAGGACCGACAGCTCGTCTTAATTTTCCCGAACTGCTGTTTCAAGAAGACCAGCTACACGACATGTCGGCCGCTGCTATAAGGAAGAGAGCTACTGAGGTAGGGATGAAGGTTGACGCAATCCAGATTTCTCTTCACTCATCCAAATCGGATTCAGGTCAAGTTCTCGTGTCTTCTCATGATACGAAGCAGGATTTGAATGAGTTTCCTGAACCGGAAGATTCTGATGAAGAATAA 447 48.55 MEGECCSTRRIVPEEKRKPQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPTARLNFPELLFQEDQLHDMSAAAIRKRATEVGMKVDAIQISLHSSKSDSGQVLVSSHDTKQDLNEFPEPEDSDEE 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6783221 6784197 - Conep17aG0087500.1 Cone17ag0855 456332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0855 148 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0855 148 MobiDBLite consensus disorder prediction 118 148 - -
Cone17ag0855 148 MobiDBLite consensus disorder prediction 118 133 - -
Cone17ag0855 148 MobiDBLite consensus disorder prediction 1 22 - -
Cone17ag0855 148 SMART rav1_2 23 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0855 148 CDD AP2 24 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0855 148 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Cone17ag0855 148 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0855 148 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0855 148 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 16 147 - -
Cone17ag0855 148 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0855 148 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677(InterPro)
Cone17ag0855 148 Pfam AP2 domain 24 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0855 Cone-Chr17:6783221 Cone4ag1168 Cone-Chr4:9947641 6.70E-24 dispersed
Cone12ag0140 Cone-Chr12:726874 Cone17ag0855 Cone-Chr17:6783221 2.51E-51 wgd
Cone12ag1093 Cone-Chr12:8927467 Cone17ag0855 Cone-Chr17:6783221 3.66E-21 wgd
Cone17ag0855 Cone-Chr17:6783221 Cone20ag0201 Cone-Chr20:868165 5.38E-97 wgd
Cone17ag0855 Cone-Chr17:6783221 Cone4ag1590 Cone-Chr4:12138815 3.82E-56 wgd
Cone17ag0855 Cone-Chr17:6783221 Cone6ag1406 Cone-Chr6:11316885 3.45E-48 wgd
Cone17ag0855 Cone-Chr17:6783221 Cone7ag1360 Cone-Chr7:9870629 1.49E-57 wgd
Cone17ag0855 Cone-Chr17:6783221 Cone8ag0140 Cone-Chr8:740221 8.29E-49 wgd
Cone17ag0855 Cone-Chr17:6783221 Cone9ag1335 Cone-Chr9:10025640 9.74E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45064 PF09328 Phytochelatin_C 4.10E-90 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0855 K09286 - csv:101219005 218.009