Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0859 ATGGGTACTTACAGATCAAGACAACCCATGGGCATGATCTTCATGTTCATAACGACGATCACCTTATCCTATGCTCTCGACATGTCGATCATCTCCTACGACGACTCTCTGGTCGACAACAAGGATTCCAGCTGGAGGACAGACGAGGACGTCATGGCCATCTACGAGGACTGGCTTGTCAAACATGGAAAGAACTACAACGCTCTGGGGGAGAAAGAGAAGAGGTTTCAGATCTTCAAGAGCAACCTCCGGTTCATCGACGACCACAACGCCGATAACCGGACATACAAGGTTGGGTTGAACCGGTTTGCCGATCTGACCAGCGAGGAGTACCGGTCCATGTACCTTGGTGCGAGGATCGGTGGTTCTAGGAACAAAGTGACCAAGGCGAGCAATCGATATGAGCCGCGCGTCGGAGATCAGTTGCCGGACACCGTTGACTGGAGAAAAGAAGGCGCCGTCCTCGGCGTGAAAGACCAAGGCAGTTGTGGGAGTTGCTGGGCATTTTCGACCATAGCTGCCGTGGAAGGCGTAAACAAGATCGTTACAGGTGACCTGATATCATTATCAGAACAGGAATTGGTGGATTGTGATAGAACATATAACGAAGGATGCAACGGTGGTCTTATGGACTATGGCTTTGAATTCATCATCAACAATGGTGGTATTGACAGTGAAGAAGATTATCCCTATAAAGCCGTTGATAATCAATGCGACCAATATCGGAAAAACGCTAAGGTCGTCACAATCGATGATTACGAAGACGTTCCTGCTTACAACGAGAATGCACTGAAAAAGGCGGTCGCTAATCAGCCTGTTGCTGTTGCAATTGAAGGAGGCGGCAGAGATTTCCAGTTTTATTTATCGGGTGTATTTACTGGCAAATGTGGAACAGCATTAGACCATGGAGTCAATGTAGTTGGATACGGCTCCGAAAAGGGTCTGGATTACTGGATTGTGAGGAACTCGTGGGGGTCAAGCTGGGGAGAAAAAGGCTATATCAGAATGCAACGAAATCTGGCCGGAAATTCAAATGGGATATGTGGGATTGCAATGGAAGCCTCTTATCCAATCAAGATTGGCCAAAACCCACCTAATCCAGGCTCATCTCCTCCAACGCCTGTAAAGCCTCCTGCCGTTTGTGACAGTTATTACTCTTGTCCTCAAAGTAGCACTTGTTGCTGTATCTATGAGTATGCAAACTATTGCTTCTCATGGGGTTGCTGCCCACTAGAGTCTGCTACATGCTGTGACGATCATTACAGTTGCTGCCCTCATGATTATCCCGTTTGTAATGTTAATCAAGGGACTTGTTTGACGAGTCAGAATAATCCAATAGGAATGAAGGCACTGAAGCGGACTGCTGCGAAACCTCATTGGGCAGTCAACAATGATGGGGAGAGGAGCAGTGCCTAA 1416 47.67 MGTYRSRQPMGMIFMFITTITLSYALDMSIISYDDSLVDNKDSSWRTDEDVMAIYEDWLVKHGKNYNALGEKEKRFQIFKSNLRFIDDHNADNRTYKVGLNRFADLTSEEYRSMYLGARIGGSRNKVTKASNRYEPRVGDQLPDTVDWRKEGAVLGVKDQGSCGSCWAFSTIAAVEGVNKIVTGDLISLSEQELVDCDRTYNEGCNGGLMDYGFEFIINNGGIDSEEDYPYKAVDNQCDQYRKNAKVVTIDDYEDVPAYNENALKKAVANQPVAVAIEGGGRDFQFYLSGVFTGKCGTALDHGVNVVGYGSEKGLDYWIVRNSWGSSWGEKGYIRMQRNLAGNSNGICGIAMEASYPIKIGQNPPNPGSSPPTPVKPPAVCDSYYSCPQSSTCCCIYEYANYCFSWGCCPLESATCCDDHYSCCPHDYPVCNVNQGTCLTSQNNPIGMKALKRTAAKPHWAVNNDGERSSA 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6816364 6818742 + Conep17aG0087900.1 Cone17ag0859 456336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0859 471 Pfam Cathepsin propeptide inhibitor domain (I29) 55 111 IPR013201 -
Cone17ag0859 471 Gene3D Cysteine proteinases 35 360 - -
Cone17ag0859 471 SMART Inhibitor_I29_2 55 111 IPR013201 -
Cone17ag0859 471 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 300 310 IPR025660 -
Cone17ag0859 471 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 160 171 IPR000169 -
Cone17ag0859 471 FunFam Cysteine protease 1 378 441 - -
Cone17ag0859 471 SMART GRAN_2 381 438 IPR000118 -
Cone17ag0859 471 Gene3D Granulin 378 441 IPR037277 -
Cone17ag0859 471 Pfam Papain family cysteine protease 142 358 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone17ag0859 471 Pfam Granulin 392 439 IPR000118 -
Cone17ag0859 471 SUPERFAMILY Granulin repeat 378 412 - -
Cone17ag0859 471 PRINTS Papain cysteine protease (C1) family signature 160 175 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone17ag0859 471 PRINTS Papain cysteine protease (C1) family signature 302 312 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone17ag0859 471 PRINTS Papain cysteine protease (C1) family signature 317 323 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone17ag0859 471 SMART pept_c1 142 358 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone17ag0859 471 CDD Peptidase_C1A 143 357 IPR039417 -
Cone17ag0859 471 FunFam Cysteine protease 1 29 360 - -
Cone17ag0859 471 SUPERFAMILY Cysteine proteinases 46 358 IPR038765 -
Cone17ag0859 471 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 317 336 IPR025661 -
Cone17ag0859 471 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 50 359 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0859 K25900 - - rcu:8288565 742.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1288 Cone-Chr12:9833913 Cone17ag0859 Cone-Chr17:6816364 1.09E-131 dispersed
Cone17ag0859 Cone-Chr17:6816364 Cone8ag1342 Cone-Chr8:10793398 5.86E-131 dispersed
Cone10ag1012 Cone-Chr10:7009428 Cone17ag0859 Cone-Chr17:6816364 5.85E-194 wgd
Cone17ag0859 Cone-Chr17:6816364 Cone20ag0206 Cone-Chr20:885790 1.90E-288 wgd
Cone17ag0859 Cone-Chr17:6816364 Cone3ag0991 Cone-Chr3:28721852 5.68E-199 wgd
Cone17ag0859 Cone-Chr17:6816364 Cone6ag1416 Cone-Chr6:11377080 1.40E-151 wgd
Cone17ag0859 Cone-Chr17:6816364 Cone8ag0142 Cone-Chr8:745722 2.81E-157 wgd
Cone17ag0859 Cone-Chr17:6816364 Cone9ag1343 Cone-Chr9:10079292 6.98E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009051 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33